Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0243 ATGGTGAACTTGGCGAGTCGCTGGAGGACGATACGCTGCTTGAATGGCAATATTCTGATACGGAGGAAGAAGCATTATCACCATCTCCATCCTCCCCACCCACTCAAACGATCTATTCTCAAGAACCTATCTCCTCCACCACACCTCCACTGTTTCGTCTCAACATTACAACAACCCAAAAATTCTGTGTCTCTAGACCTCTATACTCCTAACAAAAGAATCTCTCATTTGATCCGAAACGGTCGAATTAATGAAGCAAGAGCTCTGTTTGATGCAATGCCGCAGAGAAACATTGTTACTTGGAATTCAATGATAACTGGATATGTTAGAAGGAGAGAGATGGCTAAGGCTCGTAAGCTGTTTGATGAAATGCCTGACAGGGATGTAGTGTCATGGAACTTGATGATATCGGGTTATGTATCGTGTCAAGGGAGGTGGGTGGAGGAGGGGAGGCATTTGTTTGATGAAATGCCAGAGAGGGATTGTGTCTCGTGGAACACTATGATTAGTGGATATACACGGAGTGGGAGGATGGATGAGGCATTACAACTTTTTGACAGCATGCAGGAGCGGAATGTGGTTAGCTGGAATGCCATGGTTACTGGGTTTTTGCAGAATGGGGATGTAGAGAGGGCTATTGAGTTTTTCATGCGAATGCCGGAGAGGGACTCGGCTTCTCTCAGTGCTCTTGTGGCAGGTTTAATTCAGAATGGTGAATTGGATGAAGCAAAAAGAATTTTGCTTACGAGCAGGAGACAGGATGATGACAAAGGTGATCTGGTACATGCTTATAATATTTTGCTTGCTGGGTATGGTCAAAATGGAAGAGTCGACAAAGCTCGACAACTTTTTGATCAAATCCCATTTTATGATGGAGGACAGAAAGATGGTGGGCGGTTTGAAAGGAATGTAGTATCATGGAATTCCATGATCATGTGCTATGTGAAAGCCAGGGACATCTTTTCTGCCAGGGTTCTTTTTGATCAAATGAAAGAGCGCGATACTATTTCTTGGAACACCATGATCAGTGGCTATGTTCGCATGTCAGATATGGAAGAAGCATGGATGCTTTTTCAAGAAATGCCAAACCCTGACACACTGACATGGAATTCAATGATCTCTGGATTTGCACAGAAGGGTAATCTAGAACTTGCCCGTGCTCTATTTGCAACGATTCCACAGAAAAACCTGGTCTCATGGAACTCCATGATAGCAGGTTATGAGAATAATGGAGACTACAAAGGAGCAACTGAACTCTACAGGCAGATGCTACTCCAAGGAGAGAAACCTGATAGGCACACTTTATCTTCAGTCCTTAGTGTGTGCTCAGGGTTCGCAGCTCTGCACCTAGGTATGCAAATCCATCAGCAGATTACAAAAACAGTTATTCCAGATATACCAATAAATAACTCCCTGATTACCATGTATTCAAGGTGTGGGGCAATAGTTGAAGCTCGAACCATTTTTGATGAGGTGAAATTGCAGAAAGAAGTAATCTCTTGGAATGCAATGATCGGAGGATATGCATTTCATGGATTTGCTGCAGACGCTCTAGAACTTTTTGAGTTGATGAAGAGGCTTAAAGTGCGGCCCACTTATATTACATTTATCTCAGTTTTGAATGCGTGTGCTCATGCTGGGTTCGTGAAAGAAGGTCGGATGCACTTCAAATCCATGGCCTGTGAATTTGGAATTGAGCCACGAATTGAGCACTTTGCCTCCCTTGTGGACATTGTGGGTCGACATGGGCAGCTTGAGGAGGCTATGGATCTGATCAATAGCATGCCATTTGAACCAGATAAGGCTGTGTGGGGTGCATTACTGGGTGCTTGTAGGGTGCATAACAATGTGGAGTTGGCCCGAGTTGCAGCTGAAGCATTGATGAAACTGGAACCAGAAAGCTCAGCCCCGTATGTATTGCTTCACAACATGTATGCTGATGTGGGGCAATGGGATAATGCAACAGAAATGAGAATGATGATGGAAAGAAATAATATCAGAAAGCAACCAGGATATAGTTGGGTAGATTCCTCCCATTCTGGATAG 2046 0.4394 MVNLASRWRTIRCLNGNILIRRKKHYHHLHPPHPLKRSILKNLSPPPHLHCFVSTLQQPKNSVSLDLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIPDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPYVLLHNMYADVGQWDNATEMRMMMERNNIRKQPGYSWVDSSHSG* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0243 681 Pfam PPR repeat 194 222 IPR002885 -
Vvi3g0243 681 Pfam PPR repeat 368 391 IPR002885 -
Vvi3g0243 681 Pfam PPR repeat 130 162 IPR002885 -
Vvi3g0243 681 Pfam PPR repeat 574 595 IPR002885 -
Vvi3g0243 681 Pfam PPR repeat 470 493 IPR002885 -
Vvi3g0243 681 Pfam PPR repeat 163 193 IPR002885 -
Vvi3g0243 681 Pfam PPR repeat 305 333 IPR002885 -
Vvi3g0243 681 NCBIfam pentatricopeptide repeat 263 287 IPR002885 -
Vvi3g0243 681 NCBIfam pentatricopeptide repeat 194 223 IPR002885 -
Vvi3g0243 681 NCBIfam pentatricopeptide repeat 130 163 IPR002885 -
Vvi3g0243 681 NCBIfam pentatricopeptide repeat 398 431 IPR002885 -
Vvi3g0243 681 NCBIfam pentatricopeptide repeat 368 390 IPR002885 -
Vvi3g0243 681 NCBIfam pentatricopeptide repeat 99 130 IPR002885 -
Vvi3g0243 681 NCBIfam pentatricopeptide repeat 336 361 IPR002885 -
Vvi3g0243 681 NCBIfam pentatricopeptide repeat 163 194 IPR002885 -
Vvi3g0243 681 NCBIfam pentatricopeptide repeat 499 532 IPR002885 -
Vvi3g0243 681 NCBIfam pentatricopeptide repeat 305 334 IPR002885 -
Vvi3g0243 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Vvi3g0243 681 Gene3D Tetratricopeptide repeat domain 221 292 IPR011990 GO:0005515
Vvi3g0243 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Vvi3g0243 681 Pfam PPR repeat 264 286 IPR002885 -
Vvi3g0243 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Vvi3g0243 681 Pfam E motif 614 676 IPR046848 -
Vvi3g0243 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Vvi3g0243 681 Pfam PPR repeat family 334 362 IPR002885 -
Vvi3g0243 681 Pfam PPR repeat family 395 442 IPR002885 -
Vvi3g0243 681 Pfam PPR repeat family 497 544 IPR002885 -
Vvi3g0243 681 Pfam PPR repeat family 96 128 IPR002885 -
Vvi3g0243 681 Gene3D Tetratricopeptide repeat domain 448 680 IPR011990 GO:0005515
Vvi3g0243 681 Gene3D Tetratricopeptide repeat domain 350 447 IPR011990 GO:0005515
Vvi3g0243 681 Gene3D Tetratricopeptide repeat domain 40 143 IPR011990 GO:0005515
Vvi3g0243 681 FunFam Uncharacterized protein 221 292 - -
Vvi3g0243 681 FunFam Pentatricopeptide repeat-containing protein mitochondrial 449 555 - -
Vvi3g0243 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 333 IPR002885 -
Vvi3g0243 681 SUPERFAMILY TPR-like 172 656 IPR011990 GO:0005515
Vvi3g0243 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Vvi3g0243 681 FunFam Pentatricopeptide repeat-containing protein 556 680 - -
Vvi3g0243 681 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 172 318 IPR046960 GO:0003723|GO:0009451
Vvi3g0243 681 SUPERFAMILY HCP-like 203 428 - -
Vvi3g0243 681 Gene3D Tetratricopeptide repeat domain 148 220 IPR011990 GO:0005515
Vvi3g0243 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 290 IPR002885 -
Vvi3g0243 681 FunFam Pentatricopeptide repeat-containing protein At1g62260, mitochondrial 40 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0243 Vvi-Chr3 2084983 2087028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0243 58 676 Glycoside Hydrolase AT3G49170 30.645 9.79e-95 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0243 - - vvi:100255431 1359.36