Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3050 ATGGGGAGTGTGAGTGTTCAACTCCAGTGGAGATGGAACCAACCACCACCGTCTCCGTCACTGTCACTACCAGTTACCGTTACCATGACAGTGATGATGCAGAGGTGTAGGTGTACGCTAACCAAACAAGGCGAACGCTTCCTCACAAAGCTGGCAGCAAATTCCGATTCCGGAACCCACACATTCATTCGACGATTCGTTAATGGTTCTCCCAAATCGGTTGCTCTATCCACTCTCTCTCATCTTCTATCTCCTTCCTCCTCCTTCCCCCACCTCTCTTCTCTCGCCCTCCCTCTTTATTCATGTATCGCCCAAGCTTCCTGGTTCACTTGGAACCCTGCCATTGTTGCGGACCTTGCAGCGCTTCTTGATCAACTGGGTCGTTCTGAGGAAGCTGAAGCTCTGGTCTTTGAGGCCACTTCCAAGCTCGAATCACGAAACAGAGAGCTTGCTCTTTTCTACTGTAAGTTGCTTGAGTCACACTCCAAGCGAGGCTCACAGAAAGGTTTTGATGTTGCTTATTGTTACCTGAACCAGCTTCTTCGTAGTTCTTCCTCTGTTTACATAAAACGCAGGGCTTTTGAGTATATGATTAGTGGTTTGTGTGCAATGGATAGGCCTCGTGAAGCCGAGGATTTGGTTGAGGATTTGAGAGGCAATGGTGGAGGGATTGACCCTTCAGCTTTTGAGTTGAAGTCCATTATGTATGGTTATGGGAGGTTGGGGTTGTTCCATGATTTGCATAGAGTTGTGGATCAAATGAAGAGAAGTGGCTTTGAGATTGACACTGTTTGCGCCAATATGGTTCTTTCAACTTATGGTACTCATGGTGAGCACATGGAAATGGTTTCCTGGCTTAAGAAGATGAGAAGCTCAGGCATCTCATTCTCAGTCAGAACCTACAATTCTGTATCAAACTCTTGCCCAATGATCACGAGAATGATGGCGGAGCTGAATGAGTTGCCGCTGTCAATTGAGGAGTTGAATGTTAGATTGGAAGGAGGGGAGGCTATGGTAGTTAAGGAGTTACTGGATTCTTGTGTGATTTTGGAGGAGGTAATGGTGTGGGATTCATCAGAGGCTAAATTGGATTTGCATGGATGTCATTTGGGTTCATCCTATTTGATCATGCTGCTTTGGTTGAAAGAGATGCAACGGAGATTGAATGACTCGAATTATGGGATTCCAGCAGAAATCACTGTGGTTTGTGGGTTAGGAAAGCATAGCAATGTCAGAGGAGAGTCTCCTGTAAAAGTGTTGGTTAAGAAGATGATGGTGAATATGGGAAGTCCCTTGAGGATTGATAGGAAGAATAATGGTTGCCTTGTAGCCAAAGGTAGAGCCGTGAAAAACTGGTTATGTTAA 1365 0.4564 MGSVSVQLQWRWNQPPPSPSLSLPVTVTMTVMMQRCRCTLTKQGERFLTKLAANSDSGTHTFIRRFVNGSPKSVALSTLSHLLSPSSSFPHLSSLALPLYSCIAQASWFTWNPAIVADLAALLDQLGRSEEAEALVFEATSKLESRNRELALFYCKLLESHSKRGSQKGFDVAYCYLNQLLRSSSSVYIKRRAFEYMISGLCAMDRPREAEDLVEDLRGNGGGIDPSAFELKSIMYGYGRLGLFHDLHRVVDQMKRSGFEIDTVCANMVLSTYGTHGEHMEMVSWLKKMRSSGISFSVRTYNSVSNSCPMITRMMAELNELPLSIEELNVRLEGGEAMVVKELLDSCVILEEVMVWDSSEAKLDLHGCHLGSSYLIMLLWLKEMQRRLNDSNYGIPAEITVVCGLGKHSNVRGESPVKVLVKKMMVNMGSPLRIDRKNNGCLVAKGRAVKNWLC* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3050 454 PANTHER OS02G0120000 PROTEIN 25 454 - -
Ahy19g3050 454 ProSiteProfiles Smr domain profile. 363 447 IPR002625 -
Ahy19g3050 454 TIGRFAM PPR: pentatricopeptide repeat domain 233 263 IPR002885 -
Ahy19g3050 454 TIGRFAM PPR: pentatricopeptide repeat domain 265 296 IPR002885 -
Ahy19g3050 454 Pfam PPR repeat 266 294 IPR002885 -
Ahy19g3050 454 Pfam PPR repeat 197 221 IPR002885 -
Ahy19g3050 454 Pfam PPR repeat 233 259 IPR002885 -
Ahy19g3050 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Ahy19g3050 454 Gene3D - 347 445 IPR036063 -
Ahy19g3050 454 PANTHER ATPASE EXPRESSION PROTEIN 3 25 454 - -
Ahy19g3050 454 SUPERFAMILY SMR domain-like 360 445 IPR036063 -
Ahy19g3050 454 SMART SMR_2 360 447 IPR002625 -
Ahy19g3050 454 Gene3D Tetratricopeptide repeat domain 121 320 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3050 Ahy-Chr19 153298777 153300801 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3050 - - gmx:100805233 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3050 19 153298777 153300801 Ahy19g3050 19 153298777 153300801 ECH
Ahy19g3050 19 153298777 153300801 Ahy9g2578 9 114863439 114865417 hybridization