Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3446 ATGAAACTTAACAATGGAATAAGATCAACAGTTGAACAAGGAAAAAATGTATTCAACCAAAATCAGAAAATCATTCATCTAGGAAAACAAGGAAAAGTTGAAGAAGCCAGAAGAGTATTCTCAAATGTCATCCACAAAAACCATGCCACATATAATTCCATGATAACCGTGTTTGCAAAAAATGGCAGAGTTATTGAGGCACAACAACTGTTTGATAAAATGTCTCACAGAAACATTATTTCATGGAACACCATGATTGCTGGGTATCTTCACAACAACATGGTTGAAGAAGCCAATAAGTTGTTTGATGTAATGCCTGAAAGAGACAATTTTTCGTGGGCTTTGATGATTACTTGCTTTACGCGTAAAGGGGAGCTTGAAAAGGCTAGAGAGTTGCTTGAGTTGGTTCCTGATAAGTTGGACACTGCTTGTTGGAATGCGATGATTGCTGGTTATGCAAAGAAGGGTCAGTTTAATGATGCTGAGAAAGTTTTTGAGGAGATGCCTGTAAAGGATTTGGTTTCTTATAACTCTATGTTAGCTAGGAATGGGAAAATGAGTTTGGCAATGCGGTTTTTCGAGAGGATGGTTGAGAGGAATGTGGTTTCGTGGAATTTGATGGTGGCTGGGTTTGTTAATAGTTGTGACTTGAGTTCTGCTTGGCAGTTTTTTGAAAAGATTCCAGATCCTAATGCTGTTTCTTGGGTTACAATGTTGTGTGGGTTTGCTAGACACGGAAAGATTTTAGAGGCTAGGAAACTCTTTGACAGAATGCCTTGTAAGAATGTGGTTTCTTGGAATGCCATGATTGCAGCCTATGTCCAAGACTTACAAATTGATGAAGCTGTTAAACTGTTCAAAGAAATGCCGTATAAAGATTGTGTATCATGGACTACAATAATTAATGGGTACGTTCGGGTTGGCAAGCTTGATGAAGCACATGAAGTTTACAATCAGATGCCTTACAAAGACATAGCTGCGAAAACAGCGTTAATGTCAGGATTAATACAGAATGGAAGGGTAGATGAGGCAAGTCGAGTTTTCAGTCAACTCGGTAAACGTGATGCTATTTGTTGGAACAGCATGATCGCAGGCTATTGCCAAAGTGGAAGAATGGGTGAAGCTTTCAATCTATTTAAACAAATGCCCGTTAAGAATGCTGTTTCGTGGAATACTATGATTTCTGGATTTGCTCAGGTAGGACAGATGGATAGAGCTGCGGAGATCTTTGAGGCCATGGGGGAGAAGAATATTGTTTCCTGGAATTCTCTTATTACAGGTTTTCTTCAAAATAGTTTATACTTGGATGCTCTTAAGAGTTTCGTTTTGTTGGGGCAGGAAGGAAAGAAACCTGATCAATCAACTTTTGCATGTTCCTTAAGTGCATGTGCTAATCTTGCTGCTTTGCAAGTAGGCAAGCAACTCCATGAATTCATCCTGAAAAGTGGCTATATAAACGATTTGTTTGTTAGCAATGCTCTGATTGCCATCCCGATACGAAACTTACCTTATGCAAATGAGGCATTTTGGGCCTTTGAACAGATGTTATCCGAAGGGATGATTCCTGATGAGGTTACCTTTATTGGAATGTTGTCAGCTTGCTGTCATGCCGGTTTAGCCAATCAGGGTTTGGATTTATTTAAATGCATGATTGAAGATTTTGCTATTGAACCTTTGGCTGAACATTACAGCTGCCTAGTTGACTTGCTTGGCCGCATGGGTAGGTTAGAGGAAGCGTTTGACATAGTGAGAGGGATGAAAGTGAACTCAAATGCTGGATTATGGGGTTCATTGCTCGCAGCTTGTCGTGTACACAAGAACATGGAACTTGGTAAAATTGCAGCTATGAAGCTGTTAGAACTCGAACCGCATAATGCCTCTAATTATATTACTTTGTCAAACATGCATGCTGAGGCTGGCAGGTGGGAAGAGGTTGAAAGATTAAGGGTGCTAATGAGGGAGAGAAGAGCTGGAAAGCTACCTGGCTGCAGTTGGATTGAAGTACAAAATCAGATACAAAATTTTGTCTCGGACGATCCAGGGAAGCTGAGAACTGAAAATATTAAGATTATATTGAATACTTTATCTGCACATATGAGAGTCAAGTGTAACATATCCGACATGAAATCAGTTTTTGACATATTATGA 2148 0.3962 MKLNNGIRSTVEQGKNVFNQNQKIIHLGKQGKVEEARRVFSNVIHKNHATYNSMITVFAKNGRVIEAQQLFDKMSHRNIISWNTMIAGYLHNNMVEEANKLFDVMPERDNFSWALMITCFTRKGELEKARELLELVPDKLDTACWNAMIAGYAKKGQFNDAEKVFEEMPVKDLVSYNSMLARNGKMSLAMRFFERMVERNVVSWNLMVAGFVNSCDLSSAWQFFEKIPDPNAVSWVTMLCGFARHGKILEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKEMPYKDCVSWTTIINGYVRVGKLDEAHEVYNQMPYKDIAAKTALMSGLIQNGRVDEASRVFSQLGKRDAICWNSMIAGYCQSGRMGEAFNLFKQMPVKNAVSWNTMISGFAQVGQMDRAAEIFEAMGEKNIVSWNSLITGFLQNSLYLDALKSFVLLGQEGKKPDQSTFACSLSACANLAALQVGKQLHEFILKSGYINDLFVSNALIAIPIRNLPYANEAFWAFEQMLSEGMIPDEVTFIGMLSACCHAGLANQGLDLFKCMIEDFAIEPLAEHYSCLVDLLGRMGRLEEAFDIVRGMKVNSNAGLWGSLLAACRVHKNMELGKIAAMKLLELEPHNASNYITLSNMHAEAGRWEEVERLRVLMRERRAGKLPGCSWIEVQNQIQNFVSDDPGKLRTENIKIILNTLSAHMRVKCNISDMKSVFDIL* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3446 715 Pfam PPR repeat family 261 292 IPR002885 -
Psa2g3446 715 Pfam PPR repeat family 78 108 IPR002885 -
Psa2g3446 715 Pfam PPR repeat 47 75 IPR002885 -
Psa2g3446 715 Pfam PPR repeat 353 382 IPR002885 -
Psa2g3446 715 SUPERFAMILY TPR-like 264 645 IPR011990 GO:0005515
Psa2g3446 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Psa2g3446 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Psa2g3446 715 Gene3D Tetratricopeptide repeat domain 16 139 IPR011990 GO:0005515
Psa2g3446 715 Gene3D Tetratricopeptide repeat domain 140 229 IPR011990 GO:0005515
Psa2g3446 715 Gene3D Tetratricopeptide repeat domain 250 325 IPR011990 GO:0005515
Psa2g3446 715 Gene3D Tetratricopeptide repeat domain 326 384 IPR011990 GO:0005515
Psa2g3446 715 Gene3D Tetratricopeptide repeat domain 385 479 IPR011990 GO:0005515
Psa2g3446 715 PANTHER OS12G0289800 PROTEIN 445 496 - -
Psa2g3446 715 PANTHER OS12G0289800 PROTEIN 379 444 - -
Psa2g3446 715 PANTHER OS12G0289800 PROTEIN 7 248 - -
Psa2g3446 715 PANTHER OS12G0289800 PROTEIN 299 385 - -
Psa2g3446 715 PANTHER OS12G0289800 PROTEIN 242 323 - -
Psa2g3446 715 PANTHER OS12G0289800 PROTEIN 504 707 - -
Psa2g3446 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 558 IPR002885 -
Psa2g3446 715 PANTHER OS07G0578800 PROTEIN-RELATED 7 248 IPR045215 GO:0003723|GO:0009451
Psa2g3446 715 PANTHER OS07G0578800 PROTEIN-RELATED 242 323 IPR045215 GO:0003723|GO:0009451
Psa2g3446 715 PANTHER OS07G0578800 PROTEIN-RELATED 504 707 IPR045215 GO:0003723|GO:0009451
Psa2g3446 715 PANTHER OS07G0578800 PROTEIN-RELATED 445 496 IPR045215 GO:0003723|GO:0009451
Psa2g3446 715 PANTHER OS07G0578800 PROTEIN-RELATED 379 444 IPR045215 GO:0003723|GO:0009451
Psa2g3446 715 PANTHER OS07G0578800 PROTEIN-RELATED 299 385 IPR045215 GO:0003723|GO:0009451
Psa2g3446 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Psa2g3446 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 47 81 IPR002885 -
Psa2g3446 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 385 IPR002885 -
Psa2g3446 715 Pfam PPR repeat 419 441 IPR002885 -
Psa2g3446 715 Pfam PPR repeat 388 418 IPR002885 -
Psa2g3446 715 Pfam PPR repeat 562 588 IPR002885 -
Psa2g3446 715 Pfam PPR repeat 179 201 IPR002885 -
Psa2g3446 715 Pfam PPR repeat 111 134 IPR002885 -
Psa2g3446 715 Pfam PPR repeat 295 323 IPR002885 -
Psa2g3446 715 Pfam PPR repeat 144 171 IPR002885 -
Psa2g3446 715 Pfam PPR repeat 202 227 IPR002885 -
Psa2g3446 715 Pfam PPR repeat 525 552 IPR002885 -
Psa2g3446 715 Pfam E motif 605 667 IPR046848 -
Psa2g3446 715 Gene3D Tetratricopeptide repeat domain 490 674 IPR011990 GO:0005515
Psa2g3446 715 TIGRFAM PPR: pentatricopeptide repeat domain 295 320 IPR002885 -
Psa2g3446 715 TIGRFAM PPR: pentatricopeptide repeat domain 357 383 IPR002885 -
Psa2g3446 715 TIGRFAM PPR: pentatricopeptide repeat domain 388 419 IPR002885 -
Psa2g3446 715 TIGRFAM PPR: pentatricopeptide repeat domain 233 263 IPR002885 -
Psa2g3446 715 TIGRFAM PPR: pentatricopeptide repeat domain 144 173 IPR002885 -
Psa2g3446 715 TIGRFAM PPR: pentatricopeptide repeat domain 80 109 IPR002885 -
Psa2g3446 715 TIGRFAM PPR: pentatricopeptide repeat domain 264 289 IPR002885 -
Psa2g3446 715 TIGRFAM PPR: pentatricopeptide repeat domain 563 588 IPR002885 -
Psa2g3446 715 TIGRFAM PPR: pentatricopeptide repeat domain 50 79 IPR002885 -
Psa2g3446 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Psa2g3446 715 SUPERFAMILY TPR-like 28 167 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3446 Psa-Chr2 382207168 382209494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3446 53 700 Glycoside Hydrolase AT3G49170 28.173 8.35e-78 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3446 - - mtr:MTR_5g023040 1261.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3446 2 382207168 382209494 Psa2g3446 2 382207168 382209494 ECH