Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0206 ATGGAGAGTTGTACGCTAACGAAACAAGGGGAACGATTTCTGACGAAGCTAACCACCTCCTCCGCCACCACCGATAACCTCATTCGAAGATTCGTATTAGGCTCACCCAAATCCGTTGTTCTCACCACTCTCTCCCACCTCCTCTCTCCCTCCACCTCCTACCCACACCTCTCTTCCCTCGCCCTCCCCCTCTACGCAAGAATCAGCGAAGCCCCCTGGTTCAGTTGGAACCCCACCACCGTGGCCGAACTCGCGGCGCTTCTCCACAAACTGGGCCACCGCGCCCAATCCCAAACCCTCATTTCCGAGGCCACTTCAAAATTAGAATCTCGCAACCGCGACCTCGCTCTCTTCTACGGCAAACTCATGGAGTCACACACCAAGCGAAGCTCAAAAACAGGGTTCGATGTCGCTTATCGATACCTGAACCACCTTCTCCGCACTTCCTCCTCTGTTCACGTCAAACGCAGGGCCTACGAGTACATGGTGAGTGGGCTGTGTGCAATGGATAGGCCTCGCGAGGCCGAGGGTTTGAGACACGATGGTGGGCTTGGGCTTCAACCTTCGGGCTTCGAGTTTAAGTCCATTGCGTATGGATACGGAAGGTTGGGCTTGTTTGAGGATATGCATAGAGTGGTGGATGAAATGGAGAAGAGTGGGTTTGTTGTTGACACCGTTTGTTACAACATGGTTCTTTCAACGTACGGCATTCACGGGGAGCACGTGCAAATGGTTTGGTGGCTTCGGAGGATGAGGAATTCAGGGGTTCCGTTTTCTATCAGAACCTTCAATTCTGTCTCGAATTGTTGCCCAACGGTTATGGAAATGACGGGGAAGTTGAATGAGTTGCCGTTGTCGATTGAAGAGTTGGATGAGCAGTTGAGAGGAGGGGAGGGAATGGTGGTTAGGGAGTTGTTGGGGTGTTGTGTGATTTTGGAGGAGGTGATGGTGTGGGATTCTTCGGAGGTGAAATTGGATTTGCATGGATTTCACTTGGGTTCGGCCTATTTGATTGTGTTGCTTTGGTTGGAGGAGATGCAAAGAAGGTGGTTGAATGACTCCATAATTGGAGTTCCTGCAGGAGTTACAGTGGTTTGCGGGTCGGGAAAGCATAGCAGTGTTAGAGGAGAGTCGCCGGTGAGAGTGTTGGTTCAAAAGATGATGGTGAATATGGCAAGTCCGCTGAAGGTTGATAGGAAGAACAATGGCTGCTTCATTGCCAAAGGTAAAGCTGTCAAAAACTGGTTATGTGAATTGAAGAGGACAGGCAGGCTTGACTCTACACCAATAGAATACTATGCCTATCCGGGATTGTCTTAG 1320 0.5068 MESCTLTKQGERFLTKLTTSSATTDNLIRRFVLGSPKSVVLTTLSHLLSPSTSYPHLSSLALPLYARISEAPWFSWNPTTVAELAALLHKLGHRAQSQTLISEATSKLESRNRDLALFYGKLMESHTKRSSKTGFDVAYRYLNHLLRTSSSVHVKRRAYEYMVSGLCAMDRPREAEGLRHDGGLGLQPSGFEFKSIAYGYGRLGLFEDMHRVVDEMEKSGFVVDTVCYNMVLSTYGIHGEHVQMVWWLRRMRNSGVPFSIRTFNSVSNCCPTVMEMTGKLNELPLSIEELDEQLRGGEGMVVRELLGCCVILEEVMVWDSSEVKLDLHGFHLGSAYLIVLLWLEEMQRRWLNDSIIGVPAGVTVVCGSGKHSSVRGESPVRVLVQKMMVNMASPLKVDRKNNGCFIAKGKAVKNWLCELKRTGRLDSTPIEYYAYPGLS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0206 439 PANTHER OS02G0120000 PROTEIN 3 418 - -
Ssu7g0206 439 SUPERFAMILY SMR domain-like 323 408 IPR036063 -
Ssu7g0206 439 TIGRFAM PPR: pentatricopeptide repeat domain 196 225 IPR002885 -
Ssu7g0206 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Ssu7g0206 439 ProSiteProfiles Smr domain profile. 325 410 IPR002625 -
Ssu7g0206 439 PANTHER ATPASE EXPRESSION PROTEIN 3 3 418 - -
Ssu7g0206 439 SMART SMR_2 322 410 IPR002625 -
Ssu7g0206 439 Gene3D - 323 408 IPR036063 -
Ssu7g0206 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Ssu7g0206 439 Gene3D Tetratricopeptide repeat domain 56 304 IPR011990 GO:0005515
Ssu7g0206 439 Pfam PPR repeat 195 221 IPR002885 -
Ssu7g0206 439 Pfam PPR repeat 226 256 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0206 14 268 Glycosyltransferase AT1G05670 25.969 1.33e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0206 - - vra:106770803 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0206 7 3441991 3443411 Ssu7g0206 7 3441991 3443411 ECH