Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2661 ATGATGATGCGATTGGGGTGTGGGCAACAGCGTCATGGTGAAGAGCTCTCATGGAAATGGAAGCAAGCACAAACCAACGCGCGCGTGGTTCGAATGGAGAGCTGCACACTAACGAAACAAGGGCAAAGGTTTCTGACAAAACTAACAACCTCTTCCGCCACCAACGACAACTTGATTCGAAGATTCGTACTAGGTTCTCCCAAATCTGTTGTTCTCACCACTCTCTCACACCTTCTCTCTCCTTCCACCTCTTACCCACACCTCTCTTCCATTGCACTTCCCCTTTATGCGAGAATCACCGAATCACCTTGGTTCTCTTGGAACCCCGCTACTGTAGCAGACTTGGCAGCGCTTCTTCACAAACTGGGACACCACCAACAATCACAAATTCTCATTTCTGAAGCCACTTCAAAGTTAGAATCTCGCACGCGTGACCTCGTTCTTTTCTATGGTAAACTCTTGGAGTCACACTCCAAGCGAGGTTCACAAACGGGGTTTGATGATGCTTATTGTTACCTTAACGGGCTTCTTTGTACTTCTTCTTCTGTTTATGTTAAGCGCAGGGCTTATGAGTATATGGTGAGTGGCTTGTGTACAATGGATAGGCCTCGTGAGGCTGAGGATTTGGTTCAGGATTTGAGGGACAGTGGAGGGCTTCAACCTTCGGGTTTTGAGTTCAAGTCCATTGTGTATGGATATGGAAGGTTGGGTTTGTTTCAGGATTTGCTGAGAGTGGTGGATCAGATGCAGAAAAGTGGGCTTGTTGTTGATACTGTTGTTTATAACATGGTTCTTTCAACTTATGGTATTCATGGGGAGCACTTGAAAATGGTATATTGGCTTCAGAGGATGAGAAGTTCTGGCGTGCCCTTCTCTGTGAGGACCTTCAATTCTGTGTCAAATTGTTGCCCAACAATCATGAGAATTGTGGGGGAGTTGAATGAGCTACCGTTGTCTATTGGAGAGTTGAGTGCTAGGTTAGAAGGAGGGGAGGGTATGGTGATTAGGGAGTTATTGGAGTGTGCTTTGATTTTGGAGGAGGTAATGGTGTGGGATTCTTTGGAGGCAAAATTGGATTTGCATGGATTCCACTTGGGTTCATCCTATTTGATTGTGTTGCTATGGTTGGAGGAGATGCAACGAAGGTTGAACCACTCAAATTGTGGAGTTCCTGCTCAAATTACTGTGGTTTGTGGGTCAGGAAAGCATAGCAGTGTTAGAGGAGAGTCCCCGGTGAGAGTATTGGTTCAAAAGATGATGGTCAATATGGGAGGTCCTCTGAAGGTTGATAGGAAGAACAATGGCTGCTTTATTGCCAAAGGTAAAGCTGTGAAAAACTGGCTGTGTGAATTGAGGAAGCCAGGCATGAATGATTGA 1377 0.4575 MMMRLGCGQQRHGEELSWKWKQAQTNARVVRMESCTLTKQGQRFLTKLTTSSATNDNLIRRFVLGSPKSVVLTTLSHLLSPSTSYPHLSSIALPLYARITESPWFSWNPATVADLAALLHKLGHHQQSQILISEATSKLESRTRDLVLFYGKLLESHSKRGSQTGFDDAYCYLNGLLCTSSSVYVKRRAYEYMVSGLCTMDRPREAEDLVQDLRDSGGLQPSGFEFKSIVYGYGRLGLFQDLLRVVDQMQKSGLVVDTVVYNMVLSTYGIHGEHLKMVYWLQRMRSSGVPFSVRTFNSVSNCCPTIMRIVGELNELPLSIGELSARLEGGEGMVIRELLECALILEEVMVWDSLEAKLDLHGFHLGSSYLIVLLWLEEMQRRLNHSNCGVPAQITVVCGSGKHSSVRGESPVRVLVQKMMVNMGGPLKVDRKNNGCFIAKGKAVKNWLCELRKPGMND* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2661 458 PANTHER ATPASE EXPRESSION PROTEIN 3 20 450 - -
Apr8g2661 458 SUPERFAMILY SMR domain-like 355 440 IPR036063 -
Apr8g2661 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Apr8g2661 458 SMART SMR_2 355 442 IPR002625 -
Apr8g2661 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Apr8g2661 458 PANTHER OS02G0120000 PROTEIN 20 450 - -
Apr8g2661 458 Pfam PPR repeat 190 217 IPR002885 -
Apr8g2661 458 Gene3D - 356 440 IPR036063 -
Apr8g2661 458 ProSiteProfiles Smr domain profile. 358 442 IPR002625 -
Apr8g2661 458 Pfam Pentatricopeptide repeat domain 244 302 IPR002885 -
Apr8g2661 458 Gene3D Tetratricopeptide repeat domain 90 312 IPR011990 GO:0005515
Apr8g2661 458 TIGRFAM PPR: pentatricopeptide repeat domain 228 258 IPR002885 -
Apr8g2661 458 TIGRFAM PPR: pentatricopeptide repeat domain 259 290 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2661 189 325 Glycosyltransferase AT1G05670 25.362 3.87e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2661 - - vra:106770803 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2661 8 36378439 36380104 Apr8g2661 8 36378439 36380104 ECH