Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01564 ATGAGGATGATGAGTCTGGGATTGGGGAATGCTTTGCAGTGTCACCACGAAGCGTTGCCATGGAAATGGAAGCGTCCAGTTACAAAAATTACGATGGAGAGTTCCACACTAACCAAACAAGGACAACGATTTCTGACAAAGCTAACCACCTCCACCGCAGCCACCGACAACCTCATCCGAAGATTCGTCGATGGTTCTCCCAAATCTGTCGTTCTCACCACTCTCTCACACCTCCTCTCTCCTTCCACCTCCTATCCACACCTCTCTCCCCTCGCCCTCCCGCTGTTCGGAAGAGCGAGCGAAGCGCCGTGGTTCAGTTGGAACTCCACCACCGTGGCGGAGCTCGCGGCGCTCCTCCACAAACTGGGCCAGGAGGCCCAATCTGAAGCCCTGATTTCGGAGGCCACTTCGAAGCTACAATCTCGCAAACGCGACCTCGTTGTTTTCTACGGGAAACTCGTGGAGGCACACTCCAAACGAAAATCTGAAACCGGCTTCGACGTGGCTTACGGTTACCTGAAGAACCTTCTCCGCGCATCCAATTCGGTTCATGTGAAACGCAGGGCATACGAGTACATGGTGAGTGGGCTGTGTTCCATGGATAGGCCCGGTGAGGCAGAGGGTTTAGTTATGGGGGATGGGCTTAGGCTTGGGCTTAAACCGTCGGGTTTTGAATTGAAGTCGATTGTGTACGGATACGGGAGAATGGGATTGTTTGAGGAAATGCGGAGAGTGGTGGAAGAAATGGAGAAGAGAGGGTTTGTGGTTGACACGGTGTGTTGCAACATGGTTGTTTCGGCTTACGGAGTTCACGGGGAGCACGTGGAAATGGTGGCGTGGCTTCGGAGGATGAGGGATTCGGGGGTTCCGTTTTCTGTTAGGACTTACAATTCCGTGTCGAATTGTTGCCCTGGGGTTTTGAGAATGGTGGGGGAATTGAGGGGATTGGCGTTGTCAATTGAGGAATTGAATGAGAGTTTGGATGGAGGGGAGGGAATGGTGGTGAGGGAGTTGTTGGGGTGCAGTGGGATTTTGGGGGAGGTGATGGTGTGGGAGTCGTTGGAGGTGAAGCTGGATTTGCATGGGTTTCACTTGGGTGGGGCTTATTTGGTTGTGTTGGTTTGGTTGGAGGAGATGTGGAGAAGGTTGAGTGATTTGAATTGTGGGGTTCCTGCGGAAGTTACTGTGGTTTGTGGTTTGGGAAATCATAGCAGTGTTCGAGGGGATTCGAAGGTAAGAGTGTTGGTGCAGAAGATGATGGTGAACATGGGAAGTCCTCTGAAGGTTGATAGGAAGAACAATGGCTGCTTTATTGCAAAAGGAAAAGCTTTTAAAAATTGGTTGTGTGAAATGAGGAAGCCACCCTTGACTCAACAACACCAATAG 1386 0.513 MRMMSLGLGNALQCHHEALPWKWKRPVTKITMESSTLTKQGQRFLTKLTTSTAATDNLIRRFVDGSPKSVVLTTLSHLLSPSTSYPHLSPLALPLFGRASEAPWFSWNSTTVAELAALLHKLGQEAQSEALISEATSKLQSRKRDLVVFYGKLVEAHSKRKSETGFDVAYGYLKNLLRASNSVHVKRRAYEYMVSGLCSMDRPGEAEGLVMGDGLRLGLKPSGFELKSIVYGYGRMGLFEEMRRVVEEMEKRGFVVDTVCCNMVVSAYGVHGEHVEMVAWLRRMRDSGVPFSVRTYNSVSNCCPGVLRMVGELRGLALSIEELNESLDGGEGMVVRELLGCSGILGEVMVWESLEVKLDLHGFHLGGAYLVVLVWLEEMWRRLSDLNCGVPAEVTVVCGLGNHSSVRGDSKVRVLVQKMMVNMGSPLKVDRKNNGCFIAKGKAFKNWLCEMRKPPLTQQHQ 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01564 461 SMART SMR_2 355 442 IPR002625 -
Spst10g01564 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Spst10g01564 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Spst10g01564 461 Pfam PPR repeat 228 254 IPR002885 -
Spst10g01564 461 Pfam PPR repeat 259 289 IPR002885 -
Spst10g01564 461 SUPERFAMILY SMR domain-like 356 440 IPR036063 -
Spst10g01564 461 ProSiteProfiles Smr domain profile. 358 442 IPR002625 -
Spst10g01564 461 NCBIfam pentatricopeptide repeat 259 290 IPR002885 -
Spst10g01564 461 NCBIfam pentatricopeptide repeat 228 258 IPR002885 -
Spst10g01564 461 PANTHER OS03G0856100 PROTEIN 334 450 - -
Spst10g01564 461 Gene3D Tetratricopeptide repeat domain 92 327 IPR011990 GO:0005515
Spst10g01564 461 Gene3D - 357 440 IPR036063 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01564 108 424 Glycosyltransferase AT1G05670 22.222 7.95e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01564 - - gmx:100805233 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01564 10 16310220 16311685 Spst10g01564 10 16310220 16311685 ECH