Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0244 ATGCTGGCTAATCTACAAGTCTCCCGCCCACAGCCATGGAACCATCGATCACCATTGTTGATTCAATGCGCTCTGAGCAAACAAGGCCAACTCTTTCTCTCTTCAGTAGCCAGAGATCCCTCCGCCAGTAACAGATTGATATGCAAATTCATAGCATCTTCATCCAAATCCATAGCTCTCAATGCTCTCTCCCACCTCCTTTCCCCCACCACCACTCACCCCTACCTCTCCTCTCTTGCCCTCCCTTTGTATTCAAGGATTAGTGAAGCATCATGGTTCAGTTGGAACCCTAAGCTTATTGCAGACGTCATTGCTTTGTTATATAAACAAGGGCAGTTGAAGGAAGCAGAAACTCTAGTTTCTGAAACACTGATAAAATTAGGGTCTCGGGAGCGAGACCTTGTTTCCTTTTACTGCAATTTGATTGATTCACACTCCAAGCACAGCTCAAATCAAGGGGTTTTTGATGTGATTTCTCGTTTGAGTCGGATAGTCTCTGAATCGTCCTCTGTTTATGTTAAGGAACGAGCTTACAAGTCAATGATTAGTAGCTTATGTGCAGTTGGTCTACCTCTTGAAGCTGAGAATCTGATTGAAGAGATGAGAGTAAAAGGACTGAAACCATCTGTCTTTGAGTTCAGGTCTGTAGTGTATGGATATGGAAGAGTAGGATTGTCCGAAGATATGCAGAGAATTCTTCTGCAAATGGGGAATGAAGGGTTTGAACTGGATACAGTTGTCTCGAATATGGTTCTTTCATCCTACGGAGCCTACAACAAGCAATCTGAAATGGTGTCTTGGCTTCAAAGAATGAAGAATTCAAGCATTCCATTTTCCATCAGGACTTACAATTCAGTGTTGAATTCGTGCCCTATGATCATGTCAATCCTACAAGACCTCAAAACTTTTCCGCCAACCATTGATGAGTTGATGGAGACCTTGAAAGGGGATGAGGCATTGTTGGTTAAAGAATTGATTGGATCAATGGTTTTGGCAGAGTTAATGGAGTGGGATTGTTCAGAGGGGAAGCTGGATTTGCATGGAATGCACCTGGGGTCTGCATACTTGATAATGTTGCAGTGGAGGGAGGAGCTGAGGTATAGGCTTAATGCAGCAGAGTATGTGATGCCAGTGGAGATTACAGTGGTGTGTGGATCGGGAAAGCATAGCAGTGTTAGAGGGGAATCACCTGTGAAAAGAATGGTTCGAGAGATGATGACACGGACAAGAAGCCCGATGAAAATTGATAGGAAGAACATTGGTTGTTTTGTTGCAAAAGCAAAAGTTGTGAAGAACTGGCTGTGCTGA 1308 0.4365 MLANLQVSRPQPWNHRSPLLIQCALSKQGQLFLSSVARDPSASNRLICKFIASSSKSIALNALSHLLSPTTTHPYLSSLALPLYSRISEASWFSWNPKLIADVIALLYKQGQLKEAETLVSETLIKLGSRERDLVSFYCNLIDSHSKHSSNQGVFDVISRLSRIVSESSSVYVKERAYKSMISSLCAVGLPLEAENLIEEMRVKGLKPSVFEFRSVVYGYGRVGLSEDMQRILLQMGNEGFELDTVVSNMVLSSYGAYNKQSEMVSWLQRMKNSSIPFSIRTYNSVLNSCPMIMSILQDLKTFPPTIDELMETLKGDEALLVKELIGSMVLAELMEWDCSEGKLDLHGMHLGSAYLIMLQWREELRYRLNAAEYVMPVEITVVCGSGKHSSVRGESPVKRMVREMMTRTRSPMKIDRKNIGCFVAKAKVVKNWLC* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0244 435 Gene3D Tetratricopeptide repeat domain 98 295 IPR011990 GO:0005515
Vvi3g0244 435 ProSiteProfiles Smr domain profile. 344 428 IPR002625 -
Vvi3g0244 435 NCBIfam pentatricopeptide repeat 177 210 IPR002885 -
Vvi3g0244 435 Pfam PPR repeat 177 206 IPR002885 -
Vvi3g0244 435 Gene3D - 342 426 IPR036063 -
Vvi3g0244 435 PANTHER OS03G0856100 PROTEIN 310 435 - -
Vvi3g0244 435 SMART SMR_2 341 428 IPR002625 -
Vvi3g0244 435 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Vvi3g0244 435 Pfam Pentatricopeptide repeat domain 231 290 IPR002885 -
Vvi3g0244 435 SUPERFAMILY SMR domain-like 342 426 IPR036063 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0244 96 349 Glycosyltransferase AT1G05670 24.265 1.48e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0244 - - vvi:100250254 838.18