Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0245 ATGGAGAATACTTTTTTCAGAAATAATGGCGATGGTGCAGATTTTGTGAATATAGTGCTAAAGCTTCCATTTACCCATTCTTTTGTGCTCAGTGAGTCTAATCCTCCCTGGAGAACGAAATGTCTCTCTGTCCAAGTTCAGTCCAAGATTGGTCCTAGCTTAAAAACTGAAAGCATTCTTGAAGTCTTGGATTTGGGTCTCCATGATGAAGCTGATGAGGTTAGAATTGAAGCTGTCATTTCTATGCCGGTGATTGTCTTGTGGTCTGGTCTTGATGTGCTAAGACATGTCTTCAGAAGGCTGGATTTTTTGGAGAATGAGAAGCATGAGAAGGTTAAGAAGATTATTCCCTTTTCTCTTGGTTTTTTGGCATGTCTTTATGGACTTTGCAATGTTGTTGCTGGTCTGGATGAAACTGCATGCAAATTGTTCTTCAAAAGTGAAAATGAGAAATGGAGTCAGTTTGTGGAACATGTATTGGAAGGATTTTGGTGTCCAAAGTGTGATGGTAGAATAGCAAACGATCATGAGTTGCGTTCTAAAATTCTACATCTGCCTGATATACAGACAGTAGAGATTGGTCTGGATCATGACTATATCCATCTACAGTCCATATTTTTCAATCTTCTTTATGATGAGTCATCAGAAGAGGTTCAAGTTGCATGTGTGGGAGTAATTCGAAGAATCCTCTTACATGGGGTTCCGGATATTGTGCTTAAAACAAAATCTGAATGGGTAAAATGTGTCGAAAATCTGCTCCTTCACAAAAAGAAGGCTGTAAGAGAAGCATTCTGCATGCAGATTAGTTTCTTCCTTGAGGATTCTGTTTTGAGTTGTTTATTTCTGGATGGGGAGGCATCAGATAAAACTAAAGAACAGAAGTTTTTAGACAAAATAAAGCATGCTTTGGCAGCAGCTGAAGATCCTCAGGTCTTTGAGACACTTTTGGAATCTACTGCAGAAATTATGATTGCTGTTGATATTCAGAGTCAAATTTTCTTGTTCTCTCTTATATTGTTGGTTGATCAGCTTGATAATCCCCATTTGACAGTGAGAATGACTGCATCAAGGTTAATACACAGATCTTGCTTCTTCCATCTTAAAGGAGGTTTTGAACTAATCCTTTCAAAAGTTGTTCATATTCGGAATGAACTCTATGATTATTTATCCACGAGGGTTGCAAGCCGTCCAAAAATGGTCCAAGAGTTTGCAGAGTCTGTTATTGGTGTTGAGACTGAAGACCTTGTCAAGAAAATGGTTCCTGTTGTTCTTCCAAAGCTTGTTGTCACTCAGCAGGATGATAATCTAGCAGTTGTCACCTTACAAGAGTTGGCTAAGTGTTTGGACACAGATATGGTGCCACTGATAGTTAATTGGCTTCCAAAAGTGCTTGCTTTTGCTCTTCATCGAGCTGATGGTCAAGAATTATTCTCTGCTTTGCAGTTTTATCATGTGCATACTGGTTCTAATAACCAGGAGATCTTTGCTGCTGCATTGCCTGCACTGTTGGACGAACTTGTGTGCTTTTTGGATGTTGGTGATTTGGATGAAATAAGCAAAAGGTTAGCAAGAGTACCACAGATGATAAAAGAAGTTGCAAAAGTTCTGACTGGCAGTGAAGATCTTCCAGGCTTCTTGAGGAATCATTTTGTTGGTCTCCTTAATAGTATTGATAGAAAAATGCTCCATGCTGAGGATCTAGCACTACAGAAACAAGCCTTGAAACGTATTGAGATGCTAATTAAATTAATGGGTTCTCATCTTAGCACTTATGTGCCAAAACTTATGGTTCTTCTCATGCATGCGATTGATAAAGAATCGCTCCAGTCTGAGGGTCTCTCAGTTTTGCACTTCTTCATTGGGCAGTTGGCAAAGGTATCGCCATCTAGCACTAAACATGTAATTTCTCAAGTTTTTGCTGCTCTTATCCCCTTCCTGGAGAGAGAGAAAGAAAATCTTTCCATTCATTTGAATAAAGTAGTGGAAATTCTAGAAGAACTTGTGTTTGAGAACAAGGCTATCCTAAAGCAGCATATCCGCGAGTTTCCTCCATTGCCCAGCATTCCTGCTTTAATGAAAGTGAATGAAGTTATACAAGATGCACGTGGGTCAATGAATTTGAAGGATCAATTGCTAGATATTGTGGATGGTTTAGATCACGAGAACTTAAATGTGAGGTATATGGTGGCATGTGAGCTGAGCAAACTTCTGAACCTAAGAAGGGATGACATCACAGCTTTGATCACTGGGGAAGCAGGTTCACATATGGATGTCCTGAGCTCTTTGATTACATCCCTACTTAGAGGATGTGCAGAAGAATCAAGGACTGTAGTGGGTCAGCGGCTTAAGTTGATATGTGCCGATTGCCTTGGAGCACTAGGAGCAGTTGACCCTGCCAAAGTAAAGGGTATTTCATGCCAGCGCTTCAAAATTGAATGCTCAGATGATGATCTTATCTTTGAGTTGATCCACAAGCATCTGGCCAGGGCTTTTAGAGCTGCACCTGATACCATTGTCCAAGATTCAGCTGCATTGGCAATACAGGAGCTGCTAAAGATTGCAGGTTGTGAGGCATCACTTGATGAGAACATGGCACTTTCTACACTGCAAACACTGAAAGATAAAGAACCTTTAAAAGTCTCTATTTCTGGGGTTAAGAGCATAGATTGTTGTGATGAGATGAGTAGGAGGGGTCAGAGGTTATGGGACCGATTCTCTAATTATGTTAAAGAGATAATAGCTCCTTGCTTAACCTCTAGATTTCAACTTCCAAATGTAGTTGATTCTGCATCTGCTGGCCCAATTTACCGCCCTTCTATGTCTTTCAGAAGATGGATATTCTTTTGGATCAGGAAACTGACTGTGCTTGCAACTGGTTCTCGTGCGAGTATTTTCAATTCCTGTCGAGGTATAGTGCGCCATGATATGCAAACAGCAATATATCTGCTGCCCTATTTAGTCCTGAATGCTGTCTGTCATGGCAGCAAGGAAGCACGCTATGGAATAACAGCAGAGATCCTATCTGTTCTTGATGCAGCAGCATCAGATAATAGTGGGGCTGCAGATCATGAAAGTGGTGGGCAAAGTGAAGTGTGCATTCAAGCTGTGTTCACTCTTCTTGATAACCTTGGGCAGTGGGTGGATGATGTAGAACAAGATATCGCTCTTTCTCAATCTTTTCAATCAGCTGTTTCTAGGCAACAATCATCCAAGTTAAAGGATCAAAATCCCAATCCAACAGATTCAGACCTCCTCCTAATACAGTGTAAATATGTTTCAGAGCTTTTGGCTGCAATTCCAAAGGTGACCCTAGCCAAGGCCTCCTTCAGATGCCAGGCTTATGCTAGGTCATTGATGTACTTTGAATCTCATGTGCGGGGAAAGTCAGGATCTTTCAATCCTGCAGCTGAGAAGGGTGGCTTCTTCGAGGATGAAGATATCTCATTTCTAATGGAAATATACAGTGGTTTGGATGAGCCTGATGGTCTATCTGGCCTAGCATGTTTACGCACATCATTAAGTTTGCAAGACCAGCTTTTAATCAACAAGAAAGCAGGAAACTGGGCTGAAGTTTTAACTTCTTCTGAGCAGGCTTTGCAGATGGAGCCCACCTCGGTGCAGAGGCATTCAGATGTTCTTAATTGTTTACTGAACATGTGCCACCTCCAGGCTATGGTTATTCACGTGGATGGTTTAATATCTAGAATTCCTAAATACAAGAAAACTTGGTGCATGCAAGGTGTTCAGGCAGCATGGAGGCTTAGCAGGTGGGAGTTGATGGATGAGTACCTTGATGGGGCTGACAAGGAAGGTTTACTTTGCAGCAGCTCCGAGAGTAATGCTTCCTTTGACATGGATGTTGTGAAAATTCTCCAGGCCATGATGAAGAAAGACCAGTTCTCAGTTGCTGAGAAAATTGCTCTGTCCAAACAAGCTCTGATTGCTCCTCTAGCTGCTGCTGGTATGGATTCTTATACACGGGCTTACCCATTTGTTGTAAAGCTCCACATGCTAAGGGAGCTGGAGGACTTCCATCAACTCCTTGTTGACGAGTCTTTTTTGGAGAAATCATTCGATTTGGCTGATCTGAGATTTACAAAAATGATGGAAAACTGGGGAAATCGGCTCAGATTTACACAGCCATCCCTTTGGGCAAGAGAGCCACTTCTGGCTTTACGAAGATTGGTTCTTGGTGCAAGCGGTCTTGGTGCTCAAGTTGGTGACTGCTGGCTTCAATATGCAAAGCTCTGTCGCTCAGCTGGTCATTATGAGACAGCTAACCGAGCAATTCTGGAAGCTCAGGCTTCAGGTTCACCGAATGTTCACATGGAAAAAGCTAAGCTTCTTTGGAGCACTAGGCGATCTGATGGTGCCATTGCGGAGCTGCAACAGTCTCTCCTGAACATGCCTGTAGAGATCGTAGGTTCTGCCGCAATATCATCAATTACCAGCCGCTCACTGGTTCCAGCTAACCCTCCACCTTTACTTTGTGATACACAAACATCAAATGAGAATAGAGATATTGCAAAGACCCTCCTCCTATATTCTAGGTGGATCCATTACACTGGACAGAAGCAGAAGGAAGATGTGATGAGTCTTTATTCTAGGGTGAGAGAACTGCAACCCAGATGGGAGAAAGGATACTTCTATATGGCCAAGTATTGTGATGAAGTACTTGTTGATGCCAGGAAACGGCAGGAAGAGAATTTTGAACCGTGCCCCAGGATAATACCTTCAAAATCTGCCATTGTTGCTTCTACAAATTTAAATTCTGAGAAGCATTGGTGGTCTTACCTTCCTGATGTGCTGTTGTTTTATGCTAAGGGGCTTCATAGAGGCCACAAGAATCTCTTTCAAGCACTTCCCAGGTTGTTGACCCTGTGGTTTGACTTTGGAAGTGTTTATCAAAGAAGTGGATCATCATCGAATAAAGAATGGAAAAATATCCATGGAAAGGTAATGGGTATTATGCGAGGCTGTTTGAAGGATTTGCCTACATATCAGTGGTTAACAGTTTTGCCTCAGTTGGTTTCTAGAATTTGCCACCAGAATGAAGAAATTGTTCGTCTAGTCAAACTCATCATCACCTCTGTTCTCCGTCAATATCCACAGCAAGCCCTTTGGATTATGGCTGCAGTTTCAAAATCCACAGTACCTTCAAGGCGGGAGGCAGCTGCAGAGATCATACAAGCTGCACGAAAAGGGTCCAGCTCAGGAAACAGCGGCAACAATTTGTTTGTTCAGTTTGCTACTCTGATCGATCATCTAATCAGGTTGTGCTTCCATTCAGGCCAGCCAAAGGCAAGGACAATCAATCTCTCAACCGAATTTAGTGCCTTGAAGAGGATGATGCCACTGGGAATTATAATGCCAATCCAACAATCTCTTACTGTCACTCTACCAGCATATGAAATGAATCATGGTGACTCACTTATCTCTGATATCTTCACCTCAGATCTCCCTACAATATCTGGAATAGCTGATGAGGCTGAGATCCTCTCTTCTCTTCAGCGACCGAAGAAAATCGTTTTGTTAGGTAGTGATGGTGTCCAATGTCCATTCCTTTGCAAACCTAAGGATGATCTGAGGAAGGATGCTCGAATGATGGAATTCACTGCAATGATAAACCGTTTATTATCCAAATATCCTGAAAGTCGTCGGAGAAAGCTTTATATCCGCACCTTTGCAGTTATTCCACTAACTGAGGACTGTGGAATGGTAGAATGGGTACCCCACACTCGTGGTCTCCGTCATATACTTCAAGATATTTATATTTCCTGCGGGAAATTTGATAGGCAAAAGACTAATCCTCAAATTAAGCGGATTTATGATCAATGCCAAGGTAAAATGTTGGAAGATGAGATGCTGAAGAACAAAATCCTTCCAATGTTCCCTCCTGTTTTCCACAAATGGTTCTTGAACAACTTCTCTGAGCCAGCTGCCTGGTTCAGGGCTCGGCTTGCTTATTCACACACTACAGCAGTCTGGTCCATGGTTGGGCATATTGTGGGCCTGGGTGACCGGCATGGTGAAAATATTCTCTTTGATTCTACCACAGGAGACTGTGTTCATGTTGATTTCAGTTGCTTATTTGACAAAGGCTTGCAGCTGGAGAAGCCAGAGCTGGTGCCTTTTAGGCTAACCCAGAACATGATTGATGGTTTGGGAATTACTGGATATGAAGGCATTTTTCTGAGGGTCTCTGAAATAACACTTTCAGTACTGAGGACACATAGGGAGACTTTAGTGAGCATTCTTGAAACGTTCATCCATGATCCTCTTGTGGAGTGGACAAAATCTCATAAATCCAGTGGGGTTGAAGTTCAGAACCCCCATGCACAGAGAGCCATCAGTAATATAGAGGCCAGATTGCAAGGAATTGTTGTTGGGGTTGGAGCAGCACCATCATTGCCTCTAGCTGTAGAAGGTCAGGCTCGTCGCTTGATTGCAGAAGCAGTCTCACACAAAAATCTTGGGAAGATGTATATATGGTGGATGCCTTGGTTCTAA 6510 0.4237 MENTFFRNNGDGADFVNIVLKLPFTHSFVLSESNPPWRTKCLSVQVQSKIGPSLKTESILEVLDLGLHDEADEVRIEAVISMPVIVLWSGLDVLRHVFRRLDFLENEKHEKVKKIIPFSLGFLACLYGLCNVVAGLDETACKLFFKSENEKWSQFVEHVLEGFWCPKCDGRIANDHELRSKILHLPDIQTVEIGLDHDYIHLQSIFFNLLYDESSEEVQVACVGVIRRILLHGVPDIVLKTKSEWVKCVENLLLHKKKAVREAFCMQISFFLEDSVLSCLFLDGEASDKTKEQKFLDKIKHALAAAEDPQVFETLLESTAEIMIAVDIQSQIFLFSLILLVDQLDNPHLTVRMTASRLIHRSCFFHLKGGFELILSKVVHIRNELYDYLSTRVASRPKMVQEFAESVIGVETEDLVKKMVPVVLPKLVVTQQDDNLAVVTLQELAKCLDTDMVPLIVNWLPKVLAFALHRADGQELFSALQFYHVHTGSNNQEIFAAALPALLDELVCFLDVGDLDEISKRLARVPQMIKEVAKVLTGSEDLPGFLRNHFVGLLNSIDRKMLHAEDLALQKQALKRIEMLIKLMGSHLSTYVPKLMVLLMHAIDKESLQSEGLSVLHFFIGQLAKVSPSSTKHVISQVFAALIPFLEREKENLSIHLNKVVEILEELVFENKAILKQHIREFPPLPSIPALMKVNEVIQDARGSMNLKDQLLDIVDGLDHENLNVRYMVACELSKLLNLRRDDITALITGEAGSHMDVLSSLITSLLRGCAEESRTVVGQRLKLICADCLGALGAVDPAKVKGISCQRFKIECSDDDLIFELIHKHLARAFRAAPDTIVQDSAALAIQELLKIAGCEASLDENMALSTLQTLKDKEPLKVSISGVKSIDCCDEMSRRGQRLWDRFSNYVKEIIAPCLTSRFQLPNVVDSASAGPIYRPSMSFRRWIFFWIRKLTVLATGSRASIFNSCRGIVRHDMQTAIYLLPYLVLNAVCHGSKEARYGITAEILSVLDAAASDNSGAADHESGGQSEVCIQAVFTLLDNLGQWVDDVEQDIALSQSFQSAVSRQQSSKLKDQNPNPTDSDLLLIQCKYVSELLAAIPKVTLAKASFRCQAYARSLMYFESHVRGKSGSFNPAAEKGGFFEDEDISFLMEIYSGLDEPDGLSGLACLRTSLSLQDQLLINKKAGNWAEVLTSSEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVIHVDGLISRIPKYKKTWCMQGVQAAWRLSRWELMDEYLDGADKEGLLCSSSESNASFDMDVVKILQAMMKKDQFSVAEKIALSKQALIAPLAAAGMDSYTRAYPFVVKLHMLRELEDFHQLLVDESFLEKSFDLADLRFTKMMENWGNRLRFTQPSLWAREPLLALRRLVLGASGLGAQVGDCWLQYAKLCRSAGHYETANRAILEAQASGSPNVHMEKAKLLWSTRRSDGAIAELQQSLLNMPVEIVGSAAISSITSRSLVPANPPPLLCDTQTSNENRDIAKTLLLYSRWIHYTGQKQKEDVMSLYSRVRELQPRWEKGYFYMAKYCDEVLVDARKRQEENFEPCPRIIPSKSAIVASTNLNSEKHWWSYLPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSVYQRSGSSSNKEWKNIHGKVMGIMRGCLKDLPTYQWLTVLPQLVSRICHQNEEIVRLVKLIITSVLRQYPQQALWIMAAVSKSTVPSRREAAAEIIQAARKGSSSGNSGNNLFVQFATLIDHLIRLCFHSGQPKARTINLSTEFSALKRMMPLGIIMPIQQSLTVTLPAYEMNHGDSLISDIFTSDLPTISGIADEAEILSSLQRPKKIVLLGSDGVQCPFLCKPKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRHILQDIYISCGKFDRQKTNPQIKRIYDQCQGKMLEDEMLKNKILPMFPPVFHKWFLNNFSEPAAWFRARLAYSHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLQLEKPELVPFRLTQNMIDGLGITGYEGIFLRVSEITLSVLRTHRETLVSILETFIHDPLVEWTKSHKSSGVEVQNPHAQRAISNIEARLQGIVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWMPWF* 2170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0245 2169 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 2. 1992 2012 IPR018936 GO:0016301
Vvi3g0245 2169 SUPERFAMILY ARM repeat 56 801 IPR016024 -
Vvi3g0245 2169 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 1826 2139 IPR000403 -
Vvi3g0245 2169 PANTHER ATAXIA TELANGIECTASIA MUTATED ATM -RELATED 20 2168 - -
Vvi3g0245 2169 ProSiteProfiles FAT domain profile. 1103 1716 IPR014009 -
Vvi3g0245 2169 Pfam FATC domain 2138 2169 IPR003152 GO:0005515
Vvi3g0245 2169 FunFam Serine/threonine-protein kinase ATR 1965 2127 - -
Vvi3g0245 2169 SMART UME_cls 542 648 IPR012993 GO:0004674
Vvi3g0245 2169 Coils Coil 646 666 - -
Vvi3g0245 2169 SUPERFAMILY Protein kinase-like (PK-like) 1788 2101 IPR011009 -
Vvi3g0245 2169 FunFam Serine/threonine-protein kinase ATR 1791 1910 - -
Vvi3g0245 2169 ProSiteProfiles FATC domain profile. 2137 2169 IPR003152 GO:0005515
Vvi3g0245 2169 Gene3D - 1965 2126 IPR036940 -
Vvi3g0245 2169 Pfam UME (NUC010) domain 545 645 IPR012993 GO:0004674
Vvi3g0245 2169 Pfam FAT domain 1248 1626 IPR003151 GO:0005515
Vvi3g0245 2169 Gene3D - 326 679 IPR011989 -
Vvi3g0245 2169 Pfam Phosphatidylinositol 3- and 4-kinase 1852 2098 IPR000403 -
Vvi3g0245 2169 Gene3D - 1804 1910 - -
Vvi3g0245 2169 SMART FATC_2 2137 2169 IPR003152 GO:0005515
Vvi3g0245 2169 SMART pi3k_hr1_6 1853 2158 IPR000403 -
Vvi3g0245 2169 CDD PIKKc_ATR 1823 2099 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0245 Vvi-Chr3 2092848 2102461 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0245 K06640 - vvi:100245131 4275.32