Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02754 atgatgagagtggcggggttgaggttggggaATGTCGAACAGTGTTCTCCTCAGGAGACGCAGTCATGGAAGATGAAGCAATCTCCTCCGATGAGGATGAGAATCAGAATCAGAATGACGCTAACGAAACAAGGGGAGCGATTTCTGAGGAAGATAGGCACCTCCTCTGCCACCACCCAAAACCTCATTCAAAGATTCGTATTATCCTCACCCAAATCCGTGGTCCTCACCACTCTCTCCCACCTCCTCTCTCCCTCCACCTCCTATTCCTATCCACACCTCTCCACCCTCGCCTTCCCCCTCTACGCCCGAATCACCCAAGCCCCATGGTTCACTTGGACCCCCACCACCGCTGCCCAACTGGCCGCGCTCCTCCACCAACTGGGCCACCACGCCCAGGCCCAATCCCTCATTTCCGAGGCCACATCCAAACTGGAATCTCGGCCGCGCGAACTCGTTCTCTTCTACGGCAAACTCATGGACTCCCACTCGAAGCGAGCCTCCCAAACGGGCTTCGACGTGGCTTATGGTTACCTGAACCACCTCCTCCGCACTTCCTCCTCGCTCCACGTTAAACAAACAGCCTACCAGTACATCGTCAGCGGCTTCTGCGCCATGGATAGGCCTCGTCAGGCCTACGATTTTGCTCTTGGGCCTGGACTTGGGCTTGTACCTTCGGCCTTCGAGTTGAAGTCCGTTGTGTACGCATACGGAAGGTTGGGCCTGTTTGAGGATATGGTTAGAGTGGTGGATGAAATGGCGAAGAGAGGGTTTGTTGTGGACACCGTGTGTTACAACATGGTTCTTTCCAGTTACGGCACTCACGGGGAGCACCTCCAAATGCTTGGCTGGCTTCGGAGGATGAGGGCTGAGGCTGTTCCCTTTTCCATTAGGACCTACAATTCTGTCACCAATTGTTGCCCTAGTATTGTCAGAATGACGGAGAATTTGGAATTGGATGAGTTGGCGTTGGGGGTTGAGGAATTGAAGGAGGGTTTGGAAGGAGGGGAGGGGATGGTGATTGGGGAGTTGTTGGGGTGTAGGGTGATTATGGAGGAGGTGATGGTGTGGGATTCTTCGGAGGTGAAGCTGGATTTGCATGGGTTTCACCTGGGTGGGGCTTATTTGATTGTGTTGCTTTGGTTGGAGGAGATGCGAAGGAGGATGGGGGATGGTAACTACGGTGTTCCTGCGCAACTTACGCTGGTTTGTGGGATGGGAAAGCATAGCAGTGTAAGAGGGGAGTCGCGGGTGAGAGTGTTGGTTCAGAAGATGATGGTCAAAATGGGGAGTCCGCTCAAGGTTCATAGGAACAACAATGGCTGCTTCATTGCCAAAGGAAAAGCTGTCAAAAACTGGTTGTGTCAATTCAGGAACACCCTTAACTGA 1389 0.5198 MMRVAGLRLGNVEQCSPQETQSWKMKQSPPMRMRIRIRMTLTKQGERFLRKIGTSSATTQNLIQRFVLSSPKSVVLTTLSHLLSPSTSYSYPHLSTLAFPLYARITQAPWFTWTPTTAAQLAALLHQLGHHAQAQSLISEATSKLESRPRELVLFYGKLMDSHSKRASQTGFDVAYGYLNHLLRTSSSLHVKQTAYQYIVSGFCAMDRPRQAYDFALGPGLGLVPSAFELKSVVYAYGRLGLFEDMVRVVDEMAKRGFVVDTVCYNMVLSSYGTHGEHLQMLGWLRRMRAEAVPFSIRTYNSVTNCCPSIVRMTENLELDELALGVEELKEGLEGGEGMVIGELLGCRVIMEEVMVWDSSEVKLDLHGFHLGGAYLIVLLWLEEMRRRMGDGNYGVPAQLTLVCGMGKHSSVRGESRVRVLVQKMMVKMGSPLKVHRNNNGCFIAKGKAVKNWLCQFRNTLN 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02754 462 PANTHER OS02G0120000 PROTEIN 17 456 - -
Cca02g02754 462 Gene3D Tetratricopeptide repeat domain 119 364 IPR011990 GO:0005515
Cca02g02754 462 Pfam PPR repeat 232 258 IPR002885 -
Cca02g02754 462 Pfam PPR repeat 263 290 IPR002885 -
Cca02g02754 462 Gene3D - 365 446 IPR036063 -
Cca02g02754 462 SMART SMR_2 361 448 IPR002625 -
Cca02g02754 462 ProSiteProfiles Smr domain profile. 364 448 IPR002625 -
Cca02g02754 462 PANTHER ATPASE EXPRESSION PROTEIN 3 17 456 - -
Cca02g02754 462 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Cca02g02754 462 SUPERFAMILY SMR domain-like 362 446 IPR036063 -
Cca02g02754 462 TIGRFAM PPR: pentatricopeptide repeat domain 232 262 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02754 51 305 Glycosyltransferase AT1G05670 22.568 8.27e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02754 - - gmx:100805233 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02754 02 49024072 49026099 Cca02g02754 02 49024072 49026099 ECH