Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2651 ATGGAGACTTCCACGCTGACCAAACAAGGACAACGATTTCTGACCAAGCTAACTACCTCCTCCGCCGCCACCGACAACCTCATCCGAAGATTCGTCCAAGGTTCCCCCAAATCTGTCGTTCTCACCACTCTCTCACACCTCCTCTCTCCCACCACCTCCTATCCACAACTCTCTACCCTCGCGCTCCCACTCTACGGGAGAGCCAGCCAAGCCCCGTGGTTCACCTGGAACTCCACCACCGTGGCCGAACTCGCCGCGCTCCTCCACAAACTCGGCCACCGGGCCCAATCCGAAGCCCTGATTTCCGAGGCCATTTCCAAGCTACAATCTCGCAAACGCGAACTCGTTGTCTTCTACGGCAAACTCGCGGAAGCGTACTCCAAACGAAAGTCCGAAACCGGCTTCGATGTGGCTTACGGTTACCTCGACAATCTTCTCCGCACATCGGAATCGGTGCACGTGAAACGCAGGGCCTACGAGTACATGGTGAGTGGGCTGTGTTCCATGGACAGGCCCCGTGAGGCAGAGGGTTTAGTTATTGGACCTGCCGCTGGGCTTGGGCTTAAACCCTCAGGTTTTGAATTGAAGTCAATTGTGTACGGATACGGAAGGGTGGGGTTGTTTGAGGATATGCGGAGAGTGGTGGAGGAAATGGAGAAGAAAGGGTTTGTGGTTGACACGGTATGTTACAACATGGTTATTTCGGCTTATGGGGTTCACGGGGAGCACGTGGAAATGGTGACGTGGCTTCGGAGGATGAGGGACTCAGGGGTTCCGTTTTCCGTCAGGACTTACAACTCCGTTACGAATTGTTGCCCTGGGGTTTTGAGAATGGTGGGGGGATTGAGCGAATTGGCGTTGTCGATGGAAGAATTGAATGAGGGTTTGGACGGAGGGGAGGGAATGGTGGTGAGGGAGTTGTTGGGCTGTAGTGGGATTTTGGAGGAGGTGATGGTGTGGGAGGCGTCGGAGGTGAAGCTGGATCTGCATGGCTTTCACTTGGGTGGGGCTTATTTGGTGGTTTTGGTTTGGTTGGAGGAGATGTGGAGAAGGTTGAATGGGTTGAATTGTGGGATTCCGGCGGAAGTTACGGTGGTTTGTGGGTTGGGAAATCACAGCAGTGTTCGAGGGGAATCGAAGGTGAGAGTGCTGGTGCAGAAGATGATGGTGAAAATGGGAAGTCCGTTGAAGGTTGATAGGAAGAACAATGGGTGCTTTATTGCAAAAGGAAAAGCTGTTCAAAATTGGTTGTGTGAAATGAGGAAGGCACCTCTGAGTGGACCTGCTTCTCTGTAA 1296 0.5316 METSTLTKQGQRFLTKLTTSSAATDNLIRRFVQGSPKSVVLTTLSHLLSPTTSYPQLSTLALPLYGRASQAPWFTWNSTTVAELAALLHKLGHRAQSEALISEAISKLQSRKRELVVFYGKLAEAYSKRKSETGFDVAYGYLDNLLRTSESVHVKRRAYEYMVSGLCSMDRPREAEGLVIGPAAGLGLKPSGFELKSIVYGYGRVGLFEDMRRVVEEMEKKGFVVDTVCYNMVISAYGVHGEHVEMVTWLRRMRDSGVPFSVRTYNSVTNCCPGVLRMVGGLSELALSMEELNEGLDGGEGMVVRELLGCSGILEEVMVWEASEVKLDLHGFHLGGAYLVVLVWLEEMWRRLNGLNCGIPAEVTVVCGLGNHSSVRGESKVRVLVQKMMVKMGSPLKVDRKNNGCFIAKGKAVQNWLCEMRKAPLSGPASL* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2651 431 Pfam Pentatricopeptide repeat domain 213 272 IPR002885 -
Vra8g2651 431 Gene3D Tetratricopeptide repeat domain 184 274 IPR011990 GO:0005515
Vra8g2651 431 ProSiteProfiles Smr domain profile. 327 411 IPR002625 -
Vra8g2651 431 PANTHER OS02G0120000 PROTEIN 4 419 - -
Vra8g2651 431 Gene3D - 325 409 IPR036063 -
Vra8g2651 431 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Vra8g2651 431 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Vra8g2651 431 SUPERFAMILY SMR domain-like 325 409 IPR036063 -
Vra8g2651 431 TIGRFAM PPR: pentatricopeptide repeat domain 197 227 IPR002885 -
Vra8g2651 431 TIGRFAM PPR: pentatricopeptide repeat domain 228 259 IPR002885 -
Vra8g2651 431 PANTHER ATPASE EXPRESSION PROTEIN 3 4 419 - -
Vra8g2651 431 SMART SMR_2 324 411 IPR002625 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2651 158 276 Glycosyltransferase AT1G05670 30.579 1.78e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2651 - - vra:106770803 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2651 8 44418331 44419918 Vra8g2651 8 44418331 44419918 ECH