Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00163 ATGGATAAGACTCATCAGGCCGAGAATCTCATTCACGCTTTTAAACAAACAGATGGTGGTCATACGATTCAACCTTCTGCTTTTGAATTCAAGTCTATTATTTATGGATACGGAAGATTGGGTCTGTTTCAGGATATGGTTAGAGTGGTTGATGACATGGAGATAAATGGGTTTCTTATGGATATTGTTTCTTATAGTATGGTTCTTTCAGCTTATGGGATTCATGGGGACCATGTGGAAATGGTTTCTTGGCTTAGACGAATGAGGAATTCTGTTGTTCCGCTCTCTATAAGAACTTTTAATTTTGTGTATAACTCTTGTCCCACGGTTATGAGGAAGGTTGTGGAGTTGAATGACTTGCCGTTGTCGATGGAAGAGTTGTTGTTGAATGAATGTTTGGTTGGAGGAGAAGCTATGCTGATTAAGGAGTTACTTTCATGTTATGCCATTTTTGAAGAGGAGATGCAAAAGAGGTTGTTGAATGCTTCAAATTATGAGATTCCTGCTCAAATAAATGTGGTTTGTGGGGTTGGAAATCATAGCCGTGTGAGAGGAAAATCACTGGTTAAAGCCTTGGTTAAGAAGATGATGACGAAGATGAAACGTCCTCTAAGGATTAATAGAAAGAGAGATGGTTGCTTTGTGGCCAAAGGTAAAGCTGTTAAATTTTGGTTATGTGAATTCAGGAAGCCATGA 696 0.3879 MDKTHQAENLIHAFKQTDGGHTIQPSAFEFKSIIYGYGRLGLFQDMVRVVDDMEINGFLMDIVSYSMVLSAYGIHGDHVEMVSWLRRMRNSVVPLSIRTFNFVYNSCPTVMRKVVELNDLPLSMEELLLNECLVGGEAMLIKELLSCYAIFEEEMQKRLLNASNYEIPAQINVVCGVGNHSRVRGKSLVKALVKKMMTKMKRPLRINRKRDGCFVAKGKAVKFWLCEFRKP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00163 231 Gene3D Tetratricopeptide repeat domain 1 117 IPR011990 GO:0005515
Vifa3g00163 231 Pfam PPR repeat 31 58 IPR002885 -
Vifa3g00163 231 Pfam PPR repeat 63 90 IPR002885 -
Vifa3g00163 231 ProSiteProfiles Smr domain profile. 147 219 IPR002625 -
Vifa3g00163 231 NCBIfam pentatricopeptide repeat 63 91 IPR002885 -
Vifa3g00163 231 NCBIfam pentatricopeptide repeat 32 61 IPR002885 -
Vifa3g00163 231 PANTHER OS03G0856100 PROTEIN 4 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00163 Vifa-Chr3 12368802 12369587 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00163 23 105 Glycosyltransferase AT1G05670 28.916 4.86e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00163 - - mtr:11446726 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00163 3 12368802 12369587 Vifa3g00163 3 12368802 12369587 ECH