Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06190 ATGACATTTCAACTGCAAATACAACAATGTCGTCCTCCTCCTCCTCAACTACGTCTCAAGAATAATAATATCAGTAGTATTCGTTCTACACTTACAAAACAAGGTCAACGATTTCTCACTAAACTCACTACCACCACCAACACCGATAATCTCATCACAAAATTCGTTCATTCCTCATCCAAATCCGTACTCTTATCCACTCTCACTCACCTCCTCTCACTCTCTCCCACCAACAACAACAATCTCTCTTCTCTCGCTCTCCCCCTATACACAACAATCAGCGAATCACCATGGTACACGTGGAACTCAACCATCATCGCCGACCTCATCACCCTCCTCCACAAACTCCAACTCTACAACGAATCCCAAACCCTAATTTCAGAAGCAGTTTCAAAACTCAACAACCGAGAACGTGAACTTGTTCAATTCTACTCTAAACTCTTGGAATCACACTCCAAACGCGCTTCTCAAACTGGATTCGATTCAGCTTATTCTTACCTCAACAACATGCTTCACACTTCATCGTCACTTTATGTTAAACGCAGAGCTTATGAATCTATGGTTAGTGGTTTGTGTTCAATGGATAAGCCTCGTGAGGCTGAGAATTTGATTCAGGATTTCAAAGTTGGTGGTGGTGACAAGATTCAAATTCAACCTTCTGGTTTTGAATTCAAGCCTATTTTGTATGGATATGGAAGATTAGGTTTGTTTCATGATTTGCTTAGAGTTGTTGATCAAATGGAGAAAAATGGATTTGTTATTGATACTGTTTGTTACAACATGGTTCTTTCAAGTTTTGGAATTCATGGAGAGTATGTGGAAATGGTTTCTTGGCTTACAAGGATGAGGAATTCGGGCGTTCCGTTCTCTATCAGAACTTATAATTCGGTTTCGAATTCTTGTCCGACGGTAATGAGGAAGGTGGTGGAGTTGAATGATTTGGCATTGTCGATTGAAGAGCTATTGAATGCGGGGTTGGAAGGTGGGGAAGCTATGGTGGTTAAAGAGTTGCTTTCATGTTCTGCGATTTTTGATGAGGTTATGGTGTGGGATTCTAAAGAGGTTAAGTTGGATTTGCATGGATTTCATTTGGGTTCAGCTTATTTGGTTATGTTGCTTTGGTTGGAGGAAATGCACAAGAGGTTGTTGAATGCTTCTAATTATGAGATTCCCGCAGAAATCACTGTGGTTTGTGGGGTAGGAAAGCATAGCAATGTGAGGGGAGAATCGCCGGTTAAAGCATTGGTTAAAGAAATGATGATGAAGATGAAAGGTCCTTTAAGGATTGACAGGAAGAACAACGGCTGCTTTATTGCTAAAGGTAAAACTATCAAAATTTGGTTATGTGAATTGAGGAAGCCACAATTTCATTGA 1374 0.4039 MTFQLQIQQCRPPPPQLRLKNNNISSIRSTLTKQGQRFLTKLTTTTNTDNLITKFVHSSSKSVLLSTLTHLLSLSPTNNNNLSSLALPLYTTISESPWYTWNSTIIADLITLLHKLQLYNESQTLISEAVSKLNNRERELVQFYSKLLESHSKRASQTGFDSAYSYLNNMLHTSSSLYVKRRAYESMVSGLCSMDKPREAENLIQDFKVGGGDKIQIQPSGFEFKPILYGYGRLGLFHDLLRVVDQMEKNGFVIDTVCYNMVLSSFGIHGEYVEMVSWLTRMRNSGVPFSIRTYNSVSNSCPTVMRKVVELNDLALSIEELLNAGLEGGEAMVVKELLSCSAIFDEVMVWDSKEVKLDLHGFHLGSAYLVMLLWLEEMHKRLLNASNYEIPAEITVVCGVGKHSNVRGESPVKALVKEMMMKMKGPLRIDRKNNGCFIAKGKTIKIWLCELRKPQFH 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06190 457 SUPERFAMILY SMR domain-like 355 440 IPR036063 -
Trre1g06190 457 Gene3D - 339 440 IPR036063 -
Trre1g06190 457 Gene3D Tetratricopeptide repeat domain 34 209 IPR011990 GO:0005515
Trre1g06190 457 PANTHER OS03G0856100 PROTEIN 95 450 - -
Trre1g06190 457 SMART SMR_2 354 442 IPR002625 -
Trre1g06190 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Trre1g06190 457 Pfam PPR repeat 228 252 IPR002885 -
Trre1g06190 457 Pfam PPR repeat 257 287 IPR002885 -
Trre1g06190 457 Pfam PPR repeat 183 208 IPR002885 -
Trre1g06190 457 Gene3D Tetratricopeptide repeat domain 212 312 IPR011990 GO:0005515
Trre1g06190 457 ProSiteProfiles Smr domain profile. 357 447 IPR002625 -
Trre1g06190 457 NCBIfam pentatricopeptide repeat 227 256 IPR002885 -
Trre1g06190 457 NCBIfam pentatricopeptide repeat 257 288 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06190 Trre-Chr1 65636561 65638018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06190 102 338 Glycosyltransferase AT1G05670 23.200 1.42e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06190 - - mtr:11446726 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06190 1 65636561 65638018 Trre1g06190 1 65636561 65638018 ECH