Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi17g0513 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0514 . . . . . Adu10g02197 Aed10g1137 . . . Ahy11g2024 . Aip01g02230 Aip10g02853 . . . . Apr1g0985 . . Arst10g02816 . . . . Bva06g01142 Bva05g00559 . . Cca03g00663 . . . Dod05g1801 Dod09g0489 . . . . Gma06g01830 Gma04g01565 . . Gso6g1726 Gso6g1726 . . Lal19g1446 . . . . . Lan1g1064 . . . . . . . . . . . . . . . . . Lja1g5468 Lja4g2076 . . . . . . . . . . . . . Phco7g02406 . . . . . . . . . . . Pumo10g02240 . Pvu9g2084 . Rops10g00434 . Seca4g03372 . Spst9g02462 Ssu1g2025 . . . . . . . . . . Vian4g00601 . Vifa2g00537 . Vimu10g00815 . Viun9g00837 . . . .
Vvi17g0515 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0516 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva06g01287 . . . . . . . . . . . . . . Gma04g01715 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0517 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0518 . . . . . . Aed10g0996 . . . . . . . . . . . . . . . . . . . . Bva05g00416 . . Cca03g00527 . . . . . . . . . Gma06g01679 . . . . . . . . . Lal14g1549 Lal17g0971 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu1g2171 . Sto3g1485 Sto12g0843 . . . . . . . . . . . . . . . . . .
Vvi17g0519 . . . . . . . . Aev01g2071 . Ahy11g1818 . Aip01g02005 . . . . . Apr1g0870 . . . . . . . . Bva05g00418 Car07g00994 Car05g00777 . . . . Dod05g1680 . . . . . Gma06g01680 Gma04g01714 . . Gso6g1580 Gso6g1580 . . . . . Lal17g0972 . . . . . . . . . . . . . . . . . . . . . Lja4g2200 Mal5g4174 . . . . . . . Mtr4g3861 . . . . . . . Psa4g1276 . . . . . . . . . . . . . . . . . . . Sto3g1486 . Tpr3g4369 . . . Tsu04g03625 . . . . . . . . . . . . .
Vvi17g0520 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva06g01286 Bva05g00419 . . . . . . . . . . . . . . . Gma09g02220 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0521 . . . . . . . . . . . . . . . . . . Apr1g0871 . . . . . . . . Bva05g00420 . Car05g00776 . . . . . . . . . . Gma06g01681 Gma04g01713 . . Gso6g1581 Gso6g1581 . . . . . Lal17g0973 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0522 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi17g0513 Chr17 5761593 5764648 +
Vvi Vvi17g0514 Chr17 5767356 5770324 +
Adu Adu10g02197 Chr10 95195909 95197976 +
Aed Aed10g1137 Chr10 10539913 10545574 -
Ahy Ahy11g2024 Chr11 128931830 128934437 -
Aip Aip01g02230 Chr01 118087415 118091707 -
Aip Aip10g02853 Chr10 121681647 121683729 +
Apr Apr1g0985 Chr1 14950067 14953875 -
Arst Arst10g02816 Chr10 94480675 94482800 +
Bva Bva06g01142 Chr06 9055079 9055447 +
Bva Bva05g00559 Chr05 2759825 2764094 -
Cca Cca03g00663 Chr03 11990753 11995034 -
Dod Dod05g1801 Chr05 43422947 43426397 -
Dod Dod09g0489 Chr09 7322108 7327080 -
Gma Gma06g01830 Chr06 19430940 19434579 -
Gma Gma04g01565 Chr04 42412685 42416827 +
Gso Gso6g1726 Chr6 19077881 19081689 -
Gso Gso6g1726 Chr6 19077881 19081689 -
Lal Lal19g1446 Chr19 17078320 17079757 +
Lan Lan1g1064 Chr1 20810114 20813120 -
Lja Lja1g5468 Chr1 93534450 93539588 +
Lja Lja4g2076 Chr4 22360358 22364299 +
Phco Phco7g02406 Chr7 41980545 41983371 -
Pumo Pumo10g02240 Chr10 31128740 31133310 -
Pvu Pvu9g2084 Chr9 29886962 29889779 -
Rops Rops10g00434 Chr10 11895341 11899898 +
Seca Seca4g03372 Chr4 58396866 58402042 -
Spst Spst9g02462 Chr9 58112750 58115063 -
Ssu Ssu1g2025 Chr1 57534478 57538578 +
Vian Vian4g00601 Chr4 7273122 7278416 +
Vifa Vifa2g00537 Chr2 103375946 103378214 +
Vimu Vimu10g00815 Chr10 7211069 7213910 +
Viun Viun9g00837 Chr9 6284253 6286954 +
Vvi Vvi17g0515 Chr17 5792612 5795158 +
Vvi Vvi17g0516 Chr17 5795221 5797125 +
Bva Bva06g01287 Chr06 9770664 9774035 -
Gma Gma04g01715 Chr04 46341741 46359638 -
Vvi Vvi17g0517 Chr17 5799375 5800133 +
Vvi Vvi17g0518 Chr17 5802295 5807876 +
Aed Aed10g0996 Chr10 8745144 8749670 +
Bva Bva05g00416 Chr05 2064237 2066577 +
Cca Cca03g00527 Chr03 8806955 8811845 +
Gma Gma06g01679 Chr06 16796811 16800066 +
Lal Lal14g1549 Chr14 16178482 16182043 +
Lal Lal17g0971 Chr17 7872646 7876934 +
Ssu Ssu1g2171 Chr1 61850397 61854024 -
Sto Sto3g1485 Chr3 10949620 10953097 +
Sto Sto12g0843 Chr12 5287690 5290632 +
Vvi Vvi17g0519 Chr17 5809177 5811323 +
Aev Aev01g2071 Chr01 25267574 25269497 +
Ahy Ahy11g1818 Chr11 117432937 117435838 +
Aip Aip01g02005 Chr01 107365362 107366689 +
Apr Apr1g0870 Chr1 11630618 11633712 +
Bva Bva05g00418 Chr05 2068532 2071203 +
Car Car07g00994 Chr07 8803898 8806293 -
Car Car05g00777 Chr05 43253635 43256179 -
Dod Dod05g1680 Chr05 42085184 42087102 +
Gma Gma06g01680 Chr06 16802159 16804690 +
Gma Gma04g01714 Chr04 46337240 46339806 -
Gso Gso6g1580 Chr6 16422504 16425905 +
Gso Gso6g1580 Chr6 16422504 16425905 +
Lal Lal17g0972 Chr17 7882039 7884010 +
Lja Lja4g2200 Chr4 23729625 23731388 -
Mal Mal5g4174 Chr5 112215215 112216921 +
Mtr Mtr4g3861 Chr4 52338299 52340050 +
Psa Psa4g1276 Chr4 89362581 89364209 -
Sto Sto3g1486 Chr3 10954906 10957903 +
Tpr Tpr3g4369 Chr3 48661337 48664384 -
Tsu Tsu04g03625 Chr04 45360901 45363061 +
Vvi Vvi17g0520 Chr17 5815120 5818302 -
Bva Bva06g01286 Chr06 9766506 9770134 +
Bva Bva05g00419 Chr05 2074208 2074483 -
Gma Gma09g02220 Chr09 47728280 47731455 +
Vvi Vvi17g0521 Chr17 5826960 5831820 +
Apr Apr1g0871 Chr1 11635096 11638371 +
Bva Bva05g00420 Chr05 2075719 2078493 +
Car Car05g00776 Chr05 43198224 43209560 -
Gma Gma06g01681 Chr06 16806811 16810516 +
Gma Gma04g01713 Chr04 46331334 46335518 -
Gso Gso6g1581 Chr6 16427593 16431397 +
Gso Gso6g1581 Chr6 16427593 16431397 +
Lal Lal17g0973 Chr17 7888885 7892818 +
Vvi Vvi17g0522 Chr17 5833595 5834526 +
Lal Lal17g0971 Chr17 7872646 7876934 +