Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0515 ATGGTCCGAAGCTGCGAAACCATAGCTTACGATTCGGTCACTTCGCCGCCTCCTGTTGCTCTCGTCTGCGGCGCCAAGAACTGTGGCAAGACCGCCTTTTCTCGCCACCTTCTCAATATTCTCCTTCAGAGATATCAAAAAGTAGCTTATTTGGATACAGATGTTGGCCAGACTGAGTTTACTCCTCCTGGATTTCTATCCCTCACTGTAATTGACCAACTTACTCCAGATTTGACAATCCCATGCCTCAAGACGCCAGAGAGGTATGCAATCCTAAACTCTGATATTATTCATTACTAA 300 0.46 MVRSCETIAYDSVTSPPPVALVCGAKNCGKTAFSRHLLNILLQRYQKVAYLDTDVGQTEFTPPGFLSLTVIDQLTPDLTIPCLKTPERYAILNSDIIHY* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0515 99 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 18 89 IPR045116 GO:0006396|GO:0051731
Vvi17g0515 99 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 68 IPR027417 -
Vvi17g0515 99 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 24 75 IPR032319 -
Vvi17g0515 99 Gene3D - 2 98 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0515 Vvi-Chr17 5792612 5795158 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0515 K06947 - vvi:100244933 171.4