Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0516 ATGCTCAAGGGCAGCAAAAAGCCTGTTAAAACAGAGTTGCCCCTTGTTGTTAATACACCTGGATGGGTAAAAGGTATTGGTCATGACATACTGGTGGATGTGTTAAAATATATTGCTCCTACCCATGTAGTTAAGATAAACATTTCTGCTGAGGGTAAGAATCTTCCATCTGGAGCATTCTGGTTGGATGAGGATCATAAAGAGTCAGTGAATCTAATTGAGGTCAGTTCAGCTCGTCAGGACTCTTTTAAGAGATCGGTCTTAGTACAAAAAGATGCAGGCCTTTTACGGGATTTACGAATAATGGCTTATTTCAGGCAGTGTTTTCCAAGTAACTTGAATATCACAACAATCAAAGAACTTGCACATGCATTGACCTCTCACCCTCCTTATGAAATTCCCATATCAAGTATCAAGATTAAGCATCTCCATTGCCAGGTCCCAAGTACTGAAATTCTATACAGTTTGAATGCAACTATTGTTGGCTTGGCAGTTAGTTCTGAAGATTCTGAAAATTTATCTCCATGCATTGGCCTTGGAATTGTAAGAGGCATCCACACATTCTAA 567 0.3951 MLKGSKKPVKTELPLVVNTPGWVKGIGHDILVDVLKYIAPTHVVKINISAEGKNLPSGAFWLDEDHKESVNLIEVSSARQDSFKRSVLVQKDAGLLRDLRIMAYFRQCFPSNLNITTIKELAHALTSHPPYEIPISSIKIKHLHCQVPSTEILYSLNATIVGLAVSSEDSENLSPCIGLGIVRGIHTF* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0516 188 Gene3D - 3 109 IPR027417 -
Vvi17g0516 188 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 10 187 IPR045116 GO:0006396|GO:0051731
Vvi17g0516 188 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 11 106 IPR032319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0516 Vvi-Chr17 5795221 5797125 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0516 K06947 - vvi:100244933 360.147