Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0521 ATGAGTAGAACTGGGTTGAGGCAAAAGGCCAAGTTGGTGCTGATGACCCAGCCATACTCCATAGCAACAGTACTTGCTCAGGCGCCCTTCTGCTCCCTCTTCAACCCACTACCGGCTCCTCGCTCCATCGTCACAATGACCAACAATACCCATCAATCCAGTAATACCCACCTCGAAGCCGTCTTCAAGCAGAAGAAGATCCTCCGATCCAGCGTCCGCAAAGCACTCAAGGGCATGGACCCCTCTTCCAGATCTCAAGAGGATAATGCAGTTCAGAATATCATCCTGGAAGCTCCATGGTTTAGATCTAGTCAGAGATTATGCGCTTATATAAGTTGCAGTTCTTTGCGAGAAGTTGATACATCAAAAGTTCTGTCAGAAATTCTACAGAATCCAGCCAAAGATGGTCATACACAGATGGGGAAAAAGCTTTATGTCCCACGTGTGGAGGACAAAAATAGTTACATGCGGATGCTGAATATTACACATATGGATGATCTAATTTCAAATTCAATGAACATTTTAGAACCAGCTCCAGTAGATGGTGATGGCAATGAACGTGAAGATGTTATGCAGGCAACTGACCCAGTTGACTTGCTCCTATTACCTGGACTTGCTTTTGACAAATCTGGAAGACGCTTGGGTCGTGGTGGAGGTTACTATGATGCCTTCCTGAAGAACTACCTAGAGCTTGTGAAGGAGCGGAATTGGAAGCAACCCCTCCTTGTTGCATTGTCGTATTCTGTGCAGATAATGGATGAGGGAGTTATACCAGTCACTCCAAATGATGTTCCTGTGGATGCTCTTGTATCCCCAGCAGGTGTGATCCCCATCACCACAGCTGCACAGGAGAGGTGTCATTGA 864 0.4641 MSRTGLRQKAKLVLMTQPYSIATVLAQAPFCSLFNPLPAPRSIVTMTNNTHQSSNTHLEAVFKQKKILRSSVRKALKGMDPSSRSQEDNAVQNIILEAPWFRSSQRLCAYISCSSLREVDTSKVLSEILQNPAKDGHTQMGKKLYVPRVEDKNSYMRMLNITHMDDLISNSMNILEPAPVDGDGNEREDVMQATDPVDLLLLPGLAFDKSGRRLGRGGGYYDAFLKNYLELVKERNWKQPLLVALSYSVQIMDEGVIPVTPNDVPVDALVSPAGVIPITTAAQERCH* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0521 287 Gene3D - 57 275 IPR024185 -
Vvi17g0521 287 NCBIfam 5-formyltetrahydrofolate cyclo-ligase 65 271 IPR002698 -
Vvi17g0521 287 PANTHER ATPASE INHIBITOR/5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE 63 280 IPR002698 -
Vvi17g0521 287 Pfam 5-formyltetrahydrofolate cyclo-ligase family 65 272 IPR002698 -
Vvi17g0521 287 FunFam 5-formyltetrahydrofolate cyclo-ligase 57 275 - -
Vvi17g0521 287 SUPERFAMILY NagB/RpiA/CoA transferase-like 64 278 IPR037171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0521 Vvi-Chr17 5826960 5831820 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0521 K01934 - vvi:100241674 551.206