Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01287 ATGGCTTCCCCTTCTGAACTGGAGAACCCATCACCGAATATATACATTCCGGAGGAATGGTCCAACGCCGCAGACTCCATTGCATATGATTCAATTACTTCGCCGCCTCCTATTGCTCTTATCTGCGGTGCCAAGAACTGCGGCAAGACAACATTCTCCCGCCATCTCCTCAATGTGCTCCTTCAGAGATACAGGAAAGTAGCTTATCTTGATACAGATGTTGGGCAGCCTGAGTTCACTCCTCCTGGCTTTCTTTCACTAACCATAGTTGACAAAGTTACTCCAGACTTGACTATTCCATGCCTGAAAACACCAGAGAGATGCCTTTACTTTGGTGACGTTTCCTCTAAAAGAGATCCATCAGTATacttgaattatatatttgcaatatatgattattaccGAAAGGAGTACTACATGTTTGGTGAGGGTGAAAATCCTAAAAGGGTTGAGTTGCCTCTCATTGTGAATACTCCTGGCTGGGTGAAAGGTGTTGGTTATGATTTATTAGTGGATATCTTGAAATATGTTAGTCCGACACACGTGGTTAAGATAAACATCTCCGCTGCAAATAAGAATCTACCTGCCGGAGCATTTTGGTTAGATGGGGAATCTGATGGGGTTATTAACTTGATCGAGATAAATTCAGCTTTTCAGGACTCCTTCAATAGATCGGTGCTTGTTCAGAAGGATGCACGTCTCTTGAGGGATTTACGAATAATGGCTTATTTCAGACAATGCTTTCCTAGTGATTGGAATATTACTCAGATTAAGGAACTAGCACATGCCTTGGCCTCTCTCCGTCCATTTGAAGTTCCAATTGCAAGCATCAAGATTCAACATCTTCATTGTCAGgTACCAAGCTCCGAGATATTCTACAGTCTGAATGCTAGCATTGTTGGCTTAGCATTTGATTCTGAAGACTCTGAAAAATTACCTTGGTGTGTTGGTCTTGGGCTTGTTAGAGGCATTGACACATTTAAAGGTGTGCTCTATGTCATCACACCTGTGCCACAGAGTTCTCTGGAAAAAGTCAACCTCTTGATGCAGGGTTTTATCCAAATTCCTACCTGTTTATTGCAGGTACAGGGATGCATATCACCTTACATGTCTTCAAATGTTTTGACCGCCAGCTG 1136 0.4173 MASPSELENPSPNIYIPEEWSNAADSIAYDSITSPPPIALICGAKNCGKTTFSRHLLNVLLQRYRKVAYLDTDVGQPEFTPPGFLSLTIVDKVTPDLTIPCLKTPERCLYFGDVSSKRDPSVYLNYIFAIYDYYRKEYYMFGEGENPKRVELPLIVNTPGWVKGVGYDLLVDILKYVSPTHVVKINISAANKNLPAGAFWLDGESDGVINLIEINSAFQDSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDWNITQIKELAHALASLRPFEVPIASIKIQHLHCQVPSSEIFYSLNASIVGLAFDSEDSEKLPWCVGLGLVRGIDTFKGVLYVITPVPQSSLEKVNLLMQGFIQIPTCLLQVQGCISPYMSSNVLTAS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01287 378 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 43 245 IPR032319 -
Bva06g01287 378 Gene3D - 14 248 IPR027417 -
Bva06g01287 378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 93 IPR027417 -
Bva06g01287 378 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 13 367 IPR045116 GO:0006396|GO:0051731
Bva06g01287 378 PANTHER OS01G0354700 PROTEIN 13 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01287 Bva-Chr6 9770664 9774035 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01287 K06947 - vvi:100244933 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01287 06 9770664 9774035 Bva06g01287 06 9770664 9774035 ECH