Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5468 ATGGAGATGCTTTATGGTGAGAAACAATACAACTACAACACCAGGTTACCCACAAACACCAGCAAAATAGACCTTAATCTTAAGGTTTCCCCTTGTGGTGAAAATGCAGAAGAGAGGGGGCTGATAAGGTCATCATCATTAGTGGCTGGAGAGACAGGAAAGAAGATCAGTGTGTCATCTTTGGAGAGATCTTGCTCTCTTCCAGAACATGATAAACTCAAGCAACTCACAAATCATACTTGGTATCAAAAGCTTAAAGGTCCAAGACATTCAGCTGAAGGAGAAGTTATCTCCAAGAAAGAAAATGATTCCATGGTTTCCTGGAAAACAATTGTGAAGGAAATTCCACCTAAGTCTTCTAAAACTAAACATGAGAATCCAGCCAAAAAGCTTAAGATTCCCAATTACTGCAGTCTTAAAGAGGATGCAATGGAGATCCTGAGAAAAATTCCAAGTGTGACTACTACTGGAGATGACCCTAATGGGAAGAGAATAGAAGGACTTTTGTACAATTATAAGTCTGGCCAAGTCACTATTGTATGTGTCTGCCATGGTAACTTCCTCACTCCAACAGAGTTCATCATGCATGCTGGAGGCAAGGAAGTGGCTAACCCCATGAAGCATATCACTGTTTATTTTAGCTCATTTTAG 651 0.4025 MEMLYGEKQYNYNTRLPTNTSKIDLNLKVSPCGENAEERGLIRSSSLVAGETGKKISVSSLERSCSLPEHDKLKQLTNHTWYQKLKGPRHSAEGEVISKKENDSMVSWKTIVKEIPPKSSKTKHENPAKKLKIPNYCSLKEDAMEILRKIPSVTTTGDDPNGKRIEGLLYNYKSGQVTIVCVCHGNFLTPTEFIMHAGGKEVANPMKHITVYFSSF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5468 216 PANTHER AFP HOMOLOG 2 13 76 IPR031307 GO:0007165
Lja1g5468 216 PANTHER AFP HOMOLOG 2 88 214 IPR031307 GO:0007165
Lja1g5468 216 PANTHER NINJA-FAMILY PROTEIN AFP1 88 214 - -
Lja1g5468 216 PANTHER NINJA-FAMILY PROTEIN AFP1 13 76 - -
Lja1g5468 216 Pfam Tify domain binding domain 177 210 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5468 Lja-Chr1 93534450 93539588 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5468 - - gmx:100788995 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5468 1 93534450 93539588 Lja4g2076 4 22360358 22364299 ECH
Lja1g5468 1 93534450 93539588 Lja1g5468 1 93534450 93539588 ECH