Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0522 ATGACTTCTTCAACCTCACCCTTGTCTCTAATATTCAGCTTACTGGTTTATGTGGTTCTCCCCTTGGTTAGCAGGTCTGCAGACTCTGATCCACTGCAGGACTTTTGTATTGCAGATTTGAATGCCACAGTAATTGTTAATGGCTTTCCATGCAAACCTGCATCTGCAGTGACTTCAGATGATTTCTTCTTTGATGGGCTAAGCAAAGAGGGGAGCACGGCCAATATCTTTGGATCTAGTGTGACTAGAGGGAATGTTCTCTCGTTTCCAGGGGTCAACACTCTCGGGATCTCAATGAACCGGGTGGACATTGCTCCAGGTGGAATGAACGCACCCCACTGGCATCCTCGCTCAAGCGAGTCTGGGGTGGTCATTCAGGGGAGGGTCCTGGTAGGATTTATGACAACTGGGAATGTGTTTTACTCGAAAAATTTGACTGTTGGGCAGATGTTTGTGATTCCAATAGGGCTTGTGCACTTTCAGCAGAACATTGGAGAGGAGAAAGCCCTTCTTTTTACAGCTTTCAACAGTCAAAATCCTGGATCTGTGGTTGCCTCTGTGAATCTATTCGGATCAACACCTTCCATTCCTAATGATGTGTTGACCAAGGCCTTCCAGGTAGATGCTAATGTTGTCAATGGCATTAAATCCAAGTTTGAAAGTTCTACCAAGTGTATGGAATTTTAA 687 0.4512 MTSSTSPLSLIFSLLVYVVLPLVSRSADSDPLQDFCIADLNATVIVNGFPCKPASAVTSDDFFFDGLSKEGSTANIFGSSVTRGNVLSFPGVNTLGISMNRVDIAPGGMNAPHWHPRSSESGVVIQGRVLVGFMTTGNVFYSKNLTVGQMFVIPIGLVHFQQNIGEEKALLFTAFNSQNPGSVVASVNLFGSTPSIPNDVLTKAFQVDANVVNGIKSKFESSTKCMEF* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0522 228 FunFam Germin-like protein subfamily 1 member 8 27 222 - -
Vvi17g0522 228 Pfam Cupin 67 212 IPR006045 -
Vvi17g0522 228 SUPERFAMILY RmlC-like cupins 28 219 IPR011051 -
Vvi17g0522 228 Gene3D Jelly Rolls 27 223 IPR014710 -
Vvi17g0522 228 CDD cupin_OxOx 28 219 IPR001929 GO:0030145
Vvi17g0522 228 SMART Cupin_1_3 65 213 IPR006045 -
Vvi17g0522 228 PRINTS Germin signature 113 133 IPR001929 GO:0030145
Vvi17g0522 228 PRINTS Germin signature 176 191 IPR001929 GO:0030145
Vvi17g0522 228 PRINTS Germin signature 143 163 IPR001929 GO:0030145
Vvi17g0522 228 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 24 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0522 Vvi-Chr17 5833595 5834526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0522 1 219 Miscellaneous Gene Families AT3G05930 47.727 4.68e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0522 - - vvi:100262082 431.024