Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02220 ATGTTGTCCTCTGTCATTCTCAGAACTCATGCCTCTCCACACAGGCTCACCTCACTCTTCATCCTTCGAACAAAAACGCTTACCCACATCACATCACCATCTTGTGTGCAGTCCACTGTAACACGCGTGTGCTCACTGGTATACGATTCTTACCACCACCACTACAACCACGCGAGATTTTCCCCTCCAACCCTCCACCTCGACGTGGACCCCAATTCCCTAACTCACGATCAAGCCGTCACCATCGTCGCTTCCCTCGCCTCCGACGCCGGTTCAATGGTGGCATTGAGTTTCTTCAACTGGGCCATTGCCTCCTCCAAGTTCCGCCACTTCACGCGCCTCTACATCGCGTGCGCAGCATCTCTCATTTCAAACAAAAATTTCGAGAAGGCCCACGAAGTCATGCAGTGCATGGTGAAGAGTTTCGCCGAAATCGGGAGGGTCAAAGAAGCTATTGAAATGGTCATCGAAATGCACAACCAGGGGTTGGCTCCCAGTACCAAAACTCTGAACTGGGTCGTTAAGATTGTGACTGAAATGGGGTTGGTTGAGTATGCAGAGAATCTGTTTGATGAAATGTGTGCGAGAGGGGTGCAACCGAATTGTGTCAGCTACAGGGTCATGGTTGTTGGTTATTGTAAATTGGGTAATGTTTTGGAGTCGGATAGGTGGTTGGGTGGTATGATTGAGAGAGGGTTTGTGGTTGATAATGCGACTTTGAGTTTGATAGTGAGGGAGTTCTGTGAGAAGGGTTTTGTGACGAGGGCATTGTGGTATTTTCGGAGGTTTTGTGAGATGGGGTTGAGGCCTAATTTGATTAACTTCACGTGTATGATTGAGGGGTTGTGCAAGAGGGGTAGCGTGAAGCAGGCTTTTGAGATGTTGGAGGAGATGGTTGGGAGAGGGTGGAAGCCGAATGTGTATACTCACACGGCTTTGATTGATGGTCTGTGCAAGAAAGGGTGGACTGAGAAGGCGTTTAGATTGTTTCTTAAGCTTGTTCGAAGTGAAAATCATAAGCCGAATGTGCTTACGTATACTGCCATGATTAGTGGGTATTGCAGGGATGAGAAAATGAACCGCGCTGAAATGCTGCTGAGCCGGATGAAGGAGCAGGGATTGGCCCCTAACACGAACACGTACACGACTCTCATTGATGGGCACTGCAAAGCTGGGAATTTTGAAAGGGCATATGAGTTGATGAATGTGATGAATGAGGAAGGTTTCAGTCCCAATGTTTGTACCTATAATGCCATTGTCGATGGCCTTTGTAAAAAGGGAAGGGTGCAAGAGGCTTACAAGGTGCTTAAGAGTGGGTTTCGTAATGGGTTGGACGCTGATAAAGTTACTTATACTATTCTCATATCTGAACATTGCAAACAGGCGGAGATTAAGCAAGCGTTGGTGTTGTTCAATAAGATGGTCAAGAGTGGTATTCAACCTGACATTCATTCATACACTACATTGATTGCAGTGTTCTGTAGGGAAAAAAGAATGAAAGAAAGTGAGATGTTTTTTGAGGAAGCTGTGAGATTTGGACTTGTTCCTACGAACAAAACTTATACATCGATGATATGTGGTTATTGCAGAGAAGGTAATTTGAGATTGGCTTTGAAGTTTTTCCATAGGATGAGTGACCATGGTTGTGCTTCGGATTCTATTACTTATGGTGCTCTTATAAGTGGGCTGTGCAAACAGTCAAAATTAGATGAGGCTCGTTGTTTGTATGATGCCATGATAGAAAAGGGCCTTACTCCATGTGAAGTTACTCGAGTAACTTTGGCTTATGAATATTGCAAGATAGATGACGGTTGCTCTGCTATGGTTGTTCTTGAAAGGCTGGAAAAGAAACTCTGGGTCCGGACAGTTAATACCCTGGTCAGGAAGCTATGTAGTGAGAGGAAAGTAGGTATGGCAGCGCTGTTCTTTCATAAGTTACTAGACAAGGACCCTAATGTCAATCGTGTAACAATAGCGGCATTTATGACTGCATGCTATGAAAGCAATAAGTATGATCTTGTTTCTGATTTGTCTGCAAGAATATACAAGGAAAACCATTTAGCAATCAAAGTCAATTCTGTAATTCATCAGGTTTCCTTTGATGAGTTTGTCTATCACTTAGATGTGTCAAAGCAAGGACGTCTCTGGTTGAGGTGTACAGCGTGCAAATTTGTTGAGGAAAGTGCTAGCTGA 2193 0.4464 MLSSVILRTHASPHRLTSLFILRTKTLTHITSPSCVQSTVTRVCSLVYDSYHHHYNHARFSPPTLHLDVDPNSLTHDQAVTIVASLASDAGSMVALSFFNWAIASSKFRHFTRLYIACAASLISNKNFEKAHEVMQCMVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTLAYEYCKIDDGCSAMVVLERLEKKLWVRTVNTLVRKLCSERKVGMAALFFHKLLDKDPNVNRVTIAAFMTACYESNKYDLVSDLSARIYKENHLAIKVNSVIHQVSFDEFVYHLDVSKQGRLWLRCTACKFVEESAS 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02220 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Gma09g02220 730 TIGRFAM PPR: pentatricopeptide repeat domain 137 166 IPR002885 -
Gma09g02220 730 TIGRFAM PPR: pentatricopeptide repeat domain 203 236 IPR002885 -
Gma09g02220 730 TIGRFAM PPR: pentatricopeptide repeat domain 345 378 IPR002885 -
Gma09g02220 730 TIGRFAM PPR: pentatricopeptide repeat domain 380 413 IPR002885 -
Gma09g02220 730 TIGRFAM PPR: pentatricopeptide repeat domain 275 307 IPR002885 -
Gma09g02220 730 TIGRFAM PPR: pentatricopeptide repeat domain 308 343 IPR002885 -
Gma09g02220 730 TIGRFAM PPR: pentatricopeptide repeat domain 554 586 IPR002885 -
Gma09g02220 730 TIGRFAM PPR: pentatricopeptide repeat domain 449 483 IPR002885 -
Gma09g02220 730 TIGRFAM PPR: pentatricopeptide repeat domain 414 437 IPR002885 -
Gma09g02220 730 TIGRFAM PPR: pentatricopeptide repeat domain 520 552 IPR002885 -
Gma09g02220 730 TIGRFAM PPR: pentatricopeptide repeat domain 484 517 IPR002885 -
Gma09g02220 730 SUPERFAMILY HCP-like 390 586 - -
Gma09g02220 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Gma09g02220 730 Gene3D Tetratricopeptide repeat domain 598 709 IPR011990 GO:0005515
Gma09g02220 730 Gene3D Tetratricopeptide repeat domain 335 440 IPR011990 GO:0005515
Gma09g02220 730 Pfam PPR repeat 137 162 IPR002885 -
Gma09g02220 730 Gene3D Tetratricopeptide repeat domain 508 581 IPR011990 GO:0005515
Gma09g02220 730 Gene3D Tetratricopeptide repeat domain 262 334 IPR011990 GO:0005515
Gma09g02220 730 Gene3D Tetratricopeptide repeat domain 441 507 IPR011990 GO:0005515
Gma09g02220 730 Pfam PPR repeat 408 437 IPR002885 -
Gma09g02220 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Gma09g02220 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Gma09g02220 730 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 27 672 - -
Gma09g02220 730 Pfam PPR repeat family 341 390 IPR002885 -
Gma09g02220 730 Pfam PPR repeat family 447 495 IPR002885 -
Gma09g02220 730 Pfam PPR repeat family 520 565 IPR002885 -
Gma09g02220 730 Pfam PPR repeat family 178 214 IPR002885 -
Gma09g02220 730 Pfam PPR repeat family 270 319 IPR002885 -
Gma09g02220 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 341 IPR002885 -
Gma09g02220 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Gma09g02220 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Gma09g02220 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Gma09g02220 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Gma09g02220 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Gma09g02220 730 Gene3D Tetratricopeptide repeat domain 94 261 IPR011990 GO:0005515
Gma09g02220 730 SUPERFAMILY HCP-like 249 445 - -
Gma09g02220 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Gma09g02220 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Gma09g02220 730 PANTHER OS11G0607100 PROTEIN 27 672 - -
Gma09g02220 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02220 Gma-Chr9 47728280 47731455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02220 126 687 Glycosyltransferase AT1G05670 28.269 5.72e-72 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02220 - - gmx:100798435 1404.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02220 09 47728280 47731455 Gma09g02220 09 47728280 47731455 ECH
Gma18g02316 18 56991846 56992969 Gma09g02220 09 47728280 47731455 GST