Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0518 ATGGCGGCTTTTTCTGAAGCTGAAGCTCCATCGCCCGACATATACATACCAGAAGAATGGTCCGAAGCTGCCGAAACCATAGCTTACGATTCAGTCACTTCGCCGCCTCCTGTTGCTCTCGTCTGCGGCGCCAAGAACTGTGGCAAGACCACCTTTTCTCGCCACCTTCTCAATATTCTCCTTCAGAGATATCAAAAAGTAGCTTATTTGGATACAGATGTTGGCCAGACTGAGTTTACTCCTCCTGGATTTCTATCCCTCACTGTAATTGACCAACTTACTCCAGATTTGACAATCCCATGCCTCAAGACGCCAGAGAGATGCTATTATTTTGGTGACATTTCTTCGAAAAGGGACCCAACAGCGTACTTGAATTATATATTTGCACTGTATGATTACTATCGAAGGGAGTACTGCATGCTCAAGGGCAGCAAAAAGCCTGTTAAAACAGAGTTGCCTCTTGTTGTTAATACACCTGGATGGGTAAAAGGTATTGGTTATGACATACTGGTGGATGTGTTAAAATATATTGCTCCTACCCATGTAGTTAAGATAAACATTTCTGCTGAGGGTAAGAATCTTCCAGCTGGAGCATTCTGGTTGGATGGGGATCATAAAGAGTCAGTGAATCTAATTGAGGTCAGTTCAGCTCGTCAGGACTCTTTTAAGAGATCGGTCTTAGTACAAAAAGATGCAGGCCTTTTACGGGATTTACGAATAATGGCTTATTTCAGGCAGTGTTTTCCAAGTAACTTGAATATCACAACAATCAAAGAACTTGCACATGCATTGGCCTCTCACTCTCCTTATGAAATTCCCATACCAAGTATCAAGATTAAGCATCTCCATTGCCAGGTCCCAAGTACTGAAATTCTATACAGTTTGAATGCAACCATTGTTGGCTTGGCAGTTAGTTCTGAAGATTCTGAAAATTTATCTCCATGCGTTGGCCTTGGAATTGTAAGAGGCATTGACACATTCAAACGTTTACTCTATGTGCTTACACCTGTTCCACAAAGCACTCTGGAAAAGGTTGATCTTTTATTACTAGGGTTTGTACAAATTCCTACTTGTTTGCTACAGGTCCAGGGCTGCGTTTCGCCTTACATGTCGACAAATGTTCTGCCCACAGGCTAG 1137 0.4257 MAAFSEAEAPSPDIYIPEEWSEAAETIAYDSVTSPPPVALVCGAKNCGKTTFSRHLLNILLQRYQKVAYLDTDVGQTEFTPPGFLSLTVIDQLTPDLTIPCLKTPERCYYFGDISSKRDPTAYLNYIFALYDYYRREYCMLKGSKKPVKTELPLVVNTPGWVKGIGYDILVDVLKYIAPTHVVKINISAEGKNLPAGAFWLDGDHKESVNLIEVSSARQDSFKRSVLVQKDAGLLRDLRIMAYFRQCFPSNLNITTIKELAHALASHSPYEIPIPSIKIKHLHCQVPSTEILYSLNATIVGLAVSSEDSENLSPCVGLGIVRGIDTFKRLLYVLTPVPQSTLEKVDLLLLGFVQIPTCLLQVQGCVSPYMSTNVLPTG* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0518 378 Gene3D - 14 248 IPR027417 -
Vvi17g0518 378 FunFam Nucleolar protein 9 17 248 - -
Vvi17g0518 378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 92 IPR027417 -
Vvi17g0518 378 CDD SIMIBI 37 73 - -
Vvi17g0518 378 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 36 372 IPR045116 GO:0006396|GO:0051731
Vvi17g0518 378 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 43 245 IPR032319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0518 Vvi-Chr17 5802295 5807876 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0518 K06947 - vvi:100244933 764.222