Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00416 ATGGCTTCCTCTTCTGAACTGGAGAACTCATCATCGAACATATACATTCCGGAGGAATGGTCCAACGCCGCAGACTCCATTGCATATGATTCAATTACCTCGCTGCCTCCTATTACTCTTATTTGCGGTGCCAAGAATTGCGGCAAGACAACCTTCTCCCGCCATCTACTTAACGTGCTCCTTCAGAGATACAGGAAAGTAGCTTATCTTGATACAGATGTTGGGCAGCCTGAGTTCAGTCCTCCTGGCTTTCTTTCACTAACCATAGTTGACAAAGTTACTCCAGATTTGACTATTCCATGCCTGAAAACGCCAGAGAGGTGCCATTACTTTGGTGATGTTTCTTCTAAAAGAGATCCATCAGTATacttgaattatatatttgcaatatatgattattaccAAAAGGAGTATTGCATGTTTGATGAGGGTGAAAATCCTACTAGGGCTGACTTGCCTCTCATCGTGAATACTCCTGGCTGGGTGAAAGGTGTTGGTTATGATTTATTAGTGGATATCTTGAAATATGTTAGTCCGACGCATGTGGTTAAGATAAGCATCTCCGCTGCAAATAAGAATTTACCTGCTGGAGCATTTTGGTTAGATGGGGAATATGATGGAACAGTTAACTTGATTGAGATAAATTCAGCTTTTCAGGACTCATTCAATAGATCGGTGCTTGTTCAGAAGGATGCACGTCTTTTGCGGGATTACGAATA 719 0.4061 MASSSELENSSSNIYIPEEWSNAADSIAYDSITSLPPITLICGAKNCGKTTFSRHLLNVLLQRYRKVAYLDTDVGQPEFSPPGFLSLTIVDKVTPDLTIPCLKTPERCHYFGDVSSKRDPSVYLNYIFAIYDYYQKEYCMFDEGENPTRADLPLIVNTPGWVKGVGYDLLVDILKYVSPTHVVKISISAANKNLPAGAFWLDGEYDGTVNLIEINSAFQDSFNRSVLVQKDARLLRDYE 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00416 239 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 43 190 IPR032319 -
Bva05g00416 239 PANTHER OS01G0354700 PROTEIN 8 237 - -
Bva05g00416 239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 167 IPR027417 -
Bva05g00416 239 Gene3D - 12 233 IPR027417 -
Bva05g00416 239 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 8 237 IPR045116 GO:0006396|GO:0051731
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00416 Bva-Chr5 2064237 2066577 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00416 K06947 - vvi:100244933 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00416 05 2064237 2066577 Bva05g00416 05 2064237 2066577 ECH