Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2025 ATGgagAGGTGTTATAGTGAGAAAGAGTGCAAGTCCAACTCAAACAAAATAGACCTTAGTCTAAAGCTTTCTCCTTGCGGGGAGAATGCAGAAGAGAGGAGGTTGAGAAGGTCATCATCGTTAGTGGGTGTGGCAAATGGGGCCCAGTGGGGTCCATCTCTTGGCAGATCTTGCTCACTGCCAGCAGAGAGGCAGAGGAGGGTGCCTCCACTCTCCCCTCAAGTGCTTGCTTGGGTGGCTGCTTCTGCTGTCAATGTCAACACACCATCATCACTTCACAAACTCAAGGCACACCCAAATCCTGAGAAGGATTCAGGGCTTCTGGGTCCCAGACATTCAGCCAAAGGAGTTCCTTCAAACCTCCAAACATCAACCAAGCAGGAAAACGATTCCATGGCTCCCCGGAAAACAATGGCCAAGGAAATTTCACCTAGGCCTTCTGATACTAAGCCCGAGAATCCGGCCAAAAAGCATAAACTTGGGAACTACTGCAGTCTTAAAGGTGATGTAATGGAGATCCTGAGGCAGATGCCAAGTGTGGCTACTACTGGAGATGGCCCCAATGGGAAGAGAATAGAAGGGTTTCTGTACAAGTATAGGTCTGGTCAAGTGTGTATTGTTTGTGTCTGCCATGGTAGCTTCCTCACTCCAGCTGAGTTTGTGATGCATGCTGGGGGCAAGGAAGTGGCCAATCCCATGAAGCATATCACTGTTTTTTCTAACTCATTTTAG 732 0.4836 MERCYSEKECKSNSNKIDLSLKLSPCGENAEERRLRRSSSLVGVANGAQWGPSLGRSCSLPAERQRRVPPLSPQVLAWVAASAVNVNTPSSLHKLKAHPNPEKDSGLLGPRHSAKGVPSNLQTSTKQENDSMAPRKTMAKEISPRPSDTKPENPAKKHKLGNYCSLKGDVMEILRQMPSVATTGDGPNGKRIEGFLYKYRSGQVCIVCVCHGSFLTPAEFVMHAGGKEVANPMKHITVFSNSF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2025 243 PANTHER NINJA-FAMILY PROTEIN AFP1 8 65 - -
Ssu1g2025 243 PANTHER AFP HOMOLOG 2 69 241 IPR031307 GO:0007165
Ssu1g2025 243 PANTHER NINJA-FAMILY PROTEIN AFP1 69 241 - -
Ssu1g2025 243 MobiDBLite consensus disorder prediction 116 132 - -
Ssu1g2025 243 PANTHER AFP HOMOLOG 2 8 65 IPR031307 GO:0007165
Ssu1g2025 243 Pfam Tify domain binding domain 206 238 IPR032308 -
Ssu1g2025 243 MobiDBLite consensus disorder prediction 90 161 - -
Ssu1g2025 243 MobiDBLite consensus disorder prediction 141 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2025 Ssu-Chr1 57534478 57538578 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2025 - - gmx:100788995 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2025 1 57534478 57538578 Ssu1g2025 1 57534478 57538578 ECH