Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1485 atGGCTTCGCTTTCCGAACACGAGAATCCATCACCCAACATCCACATTCCGGAGGAATGGTCTGAGGCCGCCGATTCCATTGCATTTGATTCCACCACTTCGCCGCCTCCTGTTGCACTTATTTGCGGCCCCAAGAATTGCGGCAAGACCACCTTCTCCCGCCATCTCCTCAACGTCCTCCTCCGGAGATATAGGAAGGTGGCTTATCTAGATACGGATGTTGGCCAGCCTGAGTTTACTCCTCCTGGTTTTCTATCTATAACCATAATTGATAAAGTAACTCCAGATTTCTCGGTCCCATGCCTGAAAACACCAGAGCGGAGCCTTTTCTTTGGTGATGTTTCTTCTAAAAGAGATCCATCGGCGTACTTGAATAGCATATTTTCCATCTACgattattataaaaaagaatatcaaatgtTTGATAAGGGAGGAGATCCTACTAGGACTGAGTTTCCTCTTGTCGTGAATACTCCTGGCTGGGTGAAAGgtCTTGGTTATGACGTATTAGTGGATATGTTGAAATATATTGGTCCAACGCATGTTGTTAAGATAAGCATATCAGCTGAAAATAAGAATCTGCCTGCTGGAGCATTCTGGTTAGATAGGGAAAATGATGAGACAGTCAACTTAATTGAGATAAATTCAGCTCGTCGGGATTCATTCAATAGATCGGTTCTTGTTCAGAAGGAGGCACATCTCTTGCGGGATTTACGTATAATGGGTTATTTCAGACAGTGCTTTTCCACTGATGGGAATATTTCTACAATCAAGGAACTTGCACATGCCTTGGCCTCTCACCGTCCTTTTGAAGTTCCCATTGCAAGCATCAAGGTTCAGCATCTTCATTGTCAGGTTCCAAGTTCTGAAATATTCTACAGTCTGAATGCTAGCATTGTTGGCTTAGCAGTTGATTCTGAAGATTCTGAAAATTTACCTTGGTGTGTTGGTCTTGGAATTGTGAGAGGCATCGATACATCTAAAGGTGTGCTTTATGTGATTACACCCGTGCCACAAAGTTCTCTGGAAAATGTCAACCTTTTACTACAGGGTTATATTCAAATTCCTACTTGTTTATTGCAGGTCCAGGGATGCATATCTCCTTACATGTCTTTAAACGCTTTGACCACAAGCTAA 1137 0.4222 MASLSEHENPSPNIHIPEEWSEAADSIAFDSTTSPPPVALICGPKNCGKTTFSRHLLNVLLRRYRKVAYLDTDVGQPEFTPPGFLSITIIDKVTPDFSVPCLKTPERSLFFGDVSSKRDPSAYLNSIFSIYDYYKKEYQMFDKGGDPTRTEFPLVVNTPGWVKGLGYDVLVDMLKYIGPTHVVKISISAENKNLPAGAFWLDRENDETVNLIEINSARRDSFNRSVLVQKEAHLLRDLRIMGYFRQCFSTDGNISTIKELAHALASHRPFEVPIASIKVQHLHCQVPSSEIFYSLNASIVGLAVDSEDSENLPWCVGLGIVRGIDTSKGVLYVITPVPQSSLENVNLLLQGYIQIPTCLLQVQGCISPYMSLNALTTS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1485 378 Gene3D - 13 248 IPR027417 -
Sto3g1485 378 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 13 367 IPR045116 GO:0006396|GO:0051731
Sto3g1485 378 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 43 245 IPR032319 -
Sto3g1485 378 PANTHER OS01G0354700 PROTEIN 13 367 - -
Sto3g1485 378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 91 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1485 Sto-Chr3 10949620 10953097 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1485 K06947 - zju:107418513 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1485 3 10949620 10953097 Sto3g1485 3 10949620 10953097 ECH