Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01715 ATGAGCGTTGTCTTCTTCCTCCGTGCCGAGAGTCCATGTTCTGCGACCGCGCCACCGTTGGTGTTGAGTAGCCCAGGCAAATTGAGGGTGGTGTTCTCCCTCCGTGCGTCGGCATTGTCGAGCTTACTCATCAAGGTTCTTTATTTCTCACGAGTTGTTAGTTACACGAATTCTCAGTGTTCCTTGCCAGGAAGAACCGTCGCTTTAGTCTTCTCATTGTTCACAATCACCCGCTACTTCTGTTCCATCAGAGAGAAAGGGATGGATTCTTCTCCTTCACCAGACATATGCATCCCAGAGCAGTGGTTAGAGGCCACAGAGTCCATTGCACACAGTTCAATGCTTCCGATTGCTCTTATATGTGGTGCCAAGAATTGTGGGAAGACAACCTTCTCCCGCTATCTCCTAAACATCCTCTTGAACAAATACACCAAAGTAGCTTATCTGGATACTGATGTTGGCCAACCTGAGTTTACTCCTCCTGCTTTTCTATCACTAACCATTGTTCATAAAGTAACTCCAGATTTGACAGTTCCATGCCTGAAAACACCGGAGAGGTGCCTTTTCTTTGGTGATGTTTCTTGTAAGAGAGATCCATCAACATACTTAAGTTATGTATTTGCCATATATAATCATTACCGAAAGGAGTATTGCATCTCAGATAAGGGAGAATATCCTCATAAGATTGAGGTTCCTCTTATTGTGAATACTCCTGGTTGGGTGAAAGGCGTTGGTTATGATGTATTAGTGGACATGTTAAAATATATTTGTCCTACACATGTAGTTAAGATAAGCATATCCAGTGAAAAAAAGAATTTACCTGCTGGAGAATTCTGGTCAGATGGGGAACATGATGAAACAATTAACATAATTGAGATAAATTCAGCTCGTCAGGACTCGTTAAATAGATCGGTGCTTGTTCAGAAGGATGCACGTCTACTGCGTGATTTACGAATAATGGCTTATTTCAGACAATGCTTTTCTAGTGAGTCAAATATTTCCACAATCAAGGAACTTGCACATGCGTTGACCTCTCATTGTCCGTATGAAGTTCCTATTGCAAGCATAAAGATTCGGCACCTTCACTGTGAGGTTCCAAGTTCTGAAATATTCTACAGTTTGAATGCTACCGTTGTTGGCTTAGCAGTTGATTCTGATGGACCTGAAAATTTGCCTTGGTGTCTTGGGCTTGGGATCGTGAGGGGCATTGACTCAGTCAAAGGTGTGCTCTATGTCATTACTCCCGTGCCAAATAGTTCTCTGGAAAAAGTCAACCTCTTGCTGCAGGGTTATATCCAAATTCCTTCTTGTTTATTGCAGGTACAGGGATGCATCTCCCCTTACATGGCAGCGAATACTTTGACTACAGGCTAG 1374 0.4294 MSVVFFLRAESPCSATAPPLVLSSPGKLRVVFSLRASALSSLLIKVLYFSRVVSYTNSQCSLPGRTVALVFSLFTITRYFCSIREKGMDSSPSPDICIPEQWLEATESIAHSSMLPIALICGAKNCGKTTFSRYLLNILLNKYTKVAYLDTDVGQPEFTPPAFLSLTIVHKVTPDLTVPCLKTPERCLFFGDVSCKRDPSTYLSYVFAIYNHYRKEYCISDKGEYPHKIEVPLIVNTPGWVKGVGYDVLVDMLKYICPTHVVKISISSEKKNLPAGEFWSDGEHDETINIIEINSARQDSLNRSVLVQKDARLLRDLRIMAYFRQCFSSESNISTIKELAHALTSHCPYEVPIASIKIRHLHCEVPSSEIFYSLNATVVGLAVDSDGPENLPWCLGLGIVRGIDSVKGVLYVITPVPNSSLEKVNLLLQGYIQIPSCLLQVQGCISPYMAANTLTTG 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01715 457 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 122 324 IPR032319 -
Gma04g01715 457 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 84 446 IPR045116 GO:0006396|GO:0051731
Gma04g01715 457 Gene3D - 99 328 IPR027417 -
Gma04g01715 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 220 IPR027417 -
Gma04g01715 457 PANTHER OS01G0354700 PROTEIN 84 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01715 Gma-Chr4 46341741 46359638 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01715 K06947 - gmx:100818392 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01715 04 46341741 46359638 Gma04g01715 04 46341741 46359638 ECH