Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00527 ATGGGTTCTTCCCCTTCGCCAGAGATATACATTCCAGAGCAATGGTTAGAGGCCGGAGAGTCCATTGCAGAGAGTTCAACACCTCCTATTGCTCTTATATGTGGTGCCAAGAATTGTGGGAAGACAACCTTCTCCCGCTATCTCCTAAATATCCTTTTGCACAAATACTCCAAAGTAGCTTATCTGGATACTGATGTTGGCCAACCTGAGTTTACTCCTCCTGCTTTTCTGTCACTAACCATTCTTCATAAAGTAACTCCAGATTTGACAGTTCCATGCCTGAAGACACCGGAGAGATGCCTTTTCTTTGGTGATGTTTCTTGTAAGAGAGATCCATCTACATACTTAAGTTATGTGTGTGCCATGTATGATTATTACCGAAATGAATATTGCATTTCTGATAAGGGAGATTATCCTCATAAAATTGAGTTACCTCTTATTGTGAATACTCCTGGCTGGGTGAAAGGTGTTGGTTATGATGTATTAGTGGACATGTTGAAATATATTTGTCCAACACATGTGGTTAAGATAAACATATCAAGTGAAAATAAGAATTTACCTGCTGGAGAATTCTGGTTAGATGGGGAACATGATGAAACAATTAACTTGATTGAGATAAATTCAGCTCGTCAGGACTTGTTAAATAGATTGGTGCTCGTTAAGAAGGATGCTCGTCTCCTGCGTGATTTGAGAATAATGGCTTATTTCAGACAGTGCTTTTCTAGTGATTCAAATATTTCTACGATCAAGGAACTTGCACATGCCTTGGCCTATCACTGTCCTTATGAAGTTCCCATTGCAAGCATAAAGATTCAACATCTTCATTGTGAGGTCCCAAGCTCTGAAATCTTCTACAGTTTGAATGCTACCATTGTTGGCTTAGCAGTTGATTCTGATGTACCTGAAAATTTACCTTGGTGTCTAGGGCTCGGGATTGTGAGGGGCATTGACACAGTCAAAGGTGTGCTCTATGTCATTACTCCTGTGCCACATAGTTCTCTGGAAAAAGTCAACCTCTTACTACAGGGTTATATCCAAATTCCTACCTGTTTATTGCAGGTTCAGGGATGCATCTCACCTTACATGTCAGCAAATACTTTGACTACAAAGTAG 1113 0.4016 MGSSPSPEIYIPEQWLEAGESIAESSTPPIALICGAKNCGKTTFSRYLLNILLHKYSKVAYLDTDVGQPEFTPPAFLSLTILHKVTPDLTVPCLKTPERCLFFGDVSCKRDPSTYLSYVCAMYDYYRNEYCISDKGDYPHKIELPLIVNTPGWVKGVGYDVLVDMLKYICPTHVVKINISSENKNLPAGEFWLDGEHDETINLIEINSARQDLLNRLVLVKKDARLLRDLRIMAYFRQCFSSDSNISTIKELAHALAYHCPYEVPIASIKIQHLHCEVPSSEIFYSLNATIVGLAVDSDVPENLPWCLGLGIVRGIDTVKGVLYVITPVPHSSLEKVNLLLQGYIQIPTCLLQVQGCISPYMSANTLTTK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00527 370 Gene3D - 13 241 IPR027417 -
Cca03g00527 370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 85 IPR027417 -
Cca03g00527 370 PANTHER OS01G0354700 PROTEIN 9 359 - -
Cca03g00527 370 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 9 359 IPR045116 GO:0006396|GO:0051731
Cca03g00527 370 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 35 237 IPR032319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00527 Cca-Chr3 8806955 8811845 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00527 K06947 - gmx:100818392 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00527 03 8806955 8811845 Cca03g00527 03 8806955 8811845 ECH