Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2076 ATGGAGCACCGATTTTTTACTGAGGAACCTAACAGCACCAACTATGAGCAGATAGACCTCACTCTGAGGCTGTCTCCATATGGCTCTGTTCCAGCAGCAGAGGGTGAGAAGGGTCTGGTGAGATTTGGGGACTTGCAGACAATGAGAAGAGTGAGAAGTGGGAAGAGACTGGTGCTGGAGAAGCAGCGAAGAGAGTATGAACTCAAGATGGCATGGCATAACTTAAAAGGAGCTAGCTCTAGCATCCAAACATCACCTAAGGAGGAATATAATCCCATGGTTACCCCAAAAGAATCAATGCTTCTGGAGAGACTTGAGCATGTGAATCCTCGTCTTGAGGGTGATGATGCAATGGACATTCTGAGACAAATGCCTAGAGTGACCACTACTGGAGATGGCCCTAATGGGAAGAGAATCGAAGGACTTCTTCACAAGTATAAGGGAGGTCAAGTTTGTATTGTGTGTGTCTGTCATGGTAGCTTCCTCTCTCCCACTGAATTTGTGATGCATGCTGGAGGAAAGGAAGTGGCTAATCCCATGACACACATCACTGTTTGTTCTGATTCCTTTTGTATCATTTGA 582 0.4588 MEHRFFTEEPNSTNYEQIDLTLRLSPYGSVPAAEGEKGLVRFGDLQTMRRVRSGKRLVLEKQRREYELKMAWHNLKGASSSIQTSPKEEYNPMVTPKESMLLERLEHVNPRLEGDDAMDILRQMPRVTTTGDGPNGKRIEGLLHKYKGGQVCIVCVCHGSFLSPTEFVMHAGGKEVANPMTHITVCSDSFCII* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2076 193 Pfam Tify domain binding domain 153 185 IPR032308 -
Lja4g2076 193 PANTHER NINJA-FAMILY PROTEIN AFP1 94 190 - -
Lja4g2076 193 PANTHER AFP HOMOLOG 2 94 190 IPR031307 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2076 Lja-Chr4 22360358 22364299 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2076 - - lja:Lj4g3v1720830.1 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5468 1 93534450 93539588 Lja4g2076 4 22360358 22364299 ECH
Lja4g2076 4 22360358 22364299 Lja4g2076 4 22360358 22364299 ECH