Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0996 ATGAGTTCTTCCCCTTCACCAGACATATACATCCCAGAGCAGTGGTTAGAGGCCACAGAGTCCATTGCATACAGCTCAGTGCCTCCTATTGCTTTTATATGTGGTGCCAAGAATTGTGGGAAGACAACCTTCTCCCGCTATCTCCTAAACGTCCTCTTGAATAAATACACCAAAGTAGCTTATCTGGATACTGATGTTGGCCAACCCGAGTTTACTCCTCCTGCTTTTCTTTCACTGACAATTGTTGATAAAGTAACTCCAGATTTGACAGTTCCATGCCTGAAAACACCGGAGAGTGACTTGGATGATATATATCATCTGTGTTGGATCTTTGTATTCAATTGTGTAACTGTCAGCCAATTCAGGTGCCTTTTCTTTGGTGATGTTTCTTGTAAGAGAGATCCATCATCATACTTAAGTTACGTATTTGCCATATATAATTATTACCGAAAGGAGTATTGCATTTCAGATAAGGGAGAATATCCTCACAAGATCGAGGTTCCTCTTATTGTGAATACTCCTGGTTGGGTGAAAGGTGTTGGTTATGATGTATTAGTGGACATGTTGAAATATATTTGTCCTACACATGTAGTTAAGATAAGCATATCCAGTGAAAAAAAGAATTTACCTGCTGGAGAATTCTGGTTAGATAGGGAACATGATGAAACGATTAATTTAATTGAGATAAAATCAGCTCGTCCAGACTTGTTAAATAGACCGGTGCTTGTTCAGAAGGATGCACGTCTGCTGCGTGATTTACGAATAATGGCTTATTTCAGACAGTGCTTTTCTAGTGATTCAAATATTTCTACAATCAAGGAACTTGCTCATGCCTTGACCTCTCATTGTCCTTATGAAGTTCCCATTGCAAGCATAAAGATTCGACACCTTCATTGTGTGGTCCCAAGTTCTGAAATATTCTACAGTTTGAATGCTACCATTGTTGGCTTAGCAGTTGATTCTGATGGACCTGAAAATTTACCTTGGTGTCTTGGGCTTGGGATTGTGAGGGGCATTGACACAGTCAAAGGCGTGCTCTATGTCATCACTCCCGTGCCACATAGTTCTCTGGAAAAAGTCAACCTCTTGATACAGGGTCCAGGGATGCATCTCCCCTTACATGTCAACGAATACTTTGATCACAAACTAGTTATTCATGTGTTGACAAAGAGGAGGATTATAAGGCGTATTAGCATTTTGGCAGGGTTAGCCAACCCCTTAGAGTTATTACAGAAGCTTCGTTTCCCATGA 1251 0.4053 MSSSPSPDIYIPEQWLEATESIAYSSVPPIAFICGAKNCGKTTFSRYLLNVLLNKYTKVAYLDTDVGQPEFTPPAFLSLTIVDKVTPDLTVPCLKTPESDLDDIYHLCWIFVFNCVTVSQFRCLFFGDVSCKRDPSSYLSYVFAIYNYYRKEYCISDKGEYPHKIEVPLIVNTPGWVKGVGYDVLVDMLKYICPTHVVKISISSEKKNLPAGEFWLDREHDETINLIEIKSARPDLLNRPVLVQKDARLLRDLRIMAYFRQCFSSDSNISTIKELAHALTSHCPYEVPIASIKIRHLHCVVPSSEIFYSLNATIVGLAVDSDGPENLPWCLGLGIVRGIDTVKGVLYVITPVPHSSLEKVNLLIQGPGMHLPLHVNEYFDHKLVIHVLTKRRIIRRISILAGLANPLELLQKLRFP 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0996 416 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 35 260 IPR032319 -
Aed10g0996 416 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 122 366 IPR045116 GO:0006396|GO:0051731
Aed10g0996 416 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 9 98 IPR045116 GO:0006396|GO:0051731
Aed10g0996 416 Gene3D - 13 264 IPR027417 -
Aed10g0996 416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 78 IPR027417 -
Aed10g0996 416 PANTHER OS01G0354700 PROTEIN 122 366 - -
Aed10g0996 416 PANTHER OS01G0354700 PROTEIN 9 98 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0996 K06947 - gmx:100818392 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0996 10 8745144 8749670 Aed10g0996 10 8745144 8749670 ECH