Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2171 ATGGTTAGAGGCCGCAGAGTCCATTGCATACAGTTCAATGCTCCTATTGCTCTTATATGTGGTGCCAAGAATTGTGGGAAGACAACCTTCTTCCGCTATGTCCTAAATGTCCCCTTGAACGAATACACCAGAGTAGCCTATCTGGATACTGATGTTGGCCAACCCGAGTTTACTCCTCCTGCTTTTCTGTCACTAACCATTGTTCATAAAGTAACTCCAGattTGACAGTTCCATGCCTGAAAAAACCGGAGAGATGCCTTTTCTTTGATGATGTTTCTTCTAAGAGAGATTCATTAACATACTTAAGTTACGTATTttccatatataattattaccaTAAGGAGTATTTCATCTCTGATAAGGGAGAATATCCTCATAAGATCAAGTTGCCTCTTATTGTGAATACTCTTGGCTGGGTGAAAGGTGTTGGTTATGATGTATTGGTGGACatgttgaaatatatattttccaaCACATGTTAA 483 0.3706 MVRGRRVHCIQFNAPIALICGAKNCGKTTFFRYVLNVPLNEYTRVAYLDTDVGQPEFTPPAFLSLTIVHKVTPDLTVPCLKKPERCLFFDDVSSKRDSLTYLSYVFSIYNYYHKEYFISDKGEYPHKIKLPLIVNTLGWVKGVGYDVLVDMLKYIFSNTC 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2171 160 Gene3D - 4 158 IPR027417 -
Ssu1g2171 160 PANTHER OS01G0354700 PROTEIN 11 155 - -
Ssu1g2171 160 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 11 155 IPR045116 GO:0006396|GO:0051731
Ssu1g2171 160 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 21 155 IPR032319 -
Ssu1g2171 160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 76 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2171 Ssu-Chr1 61850397 61854024 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2171 K06947 - gmx:100818392 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2171 1 61850397 61854024 Ssu1g2171 1 61850397 61854024 ECH