Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0971 ATGATAGTGTTGCCCTTGTATTCAAAACAAGTTTCACTTTGGTGCCATTTCAAAAATAGAGTGATGAGTTCTTCCCTTAATGAGAACCCTTCACCAGACATATACATACCTAAACAATGGTCTGAGGCAGCAGAATCTATTGCACACTGTTCAACTTCAACTCCTCCAATTGTTCTTATATGCGGTGCTAAGAATTGCGGCAAAACAACTTTCTCTCGTCATCTTCTTAATGTTCTATTGAACACAGGACAATACAAAGTAGCTTATCTTGACACCGATGTTGGACAACCTGAGTTTACTCCTCCTGGTTTTTTATCTTTAACCATTGTTGATAGGGTAACTCCAGATTTGAAGATTCCATGCCTGAAAACACCAGAGAGGTGCCTTTTCTTTGGGGATGTTTCTTCTAAAACAGATCCATCTACATACTTAAATTACTTATTTGCCATATATGGTTATTTTCGAAAGGAGTATTGCACGTCTAGTAAGGAAGAATATCCGCCTAGGACCAAGTTGCCTCTTATCGTGAATACTCCTGGCTGGGTGAAGGGCGTTGGTTATGATGTGTTAGTAGAGATGCTGAAATATATTTGTCCAACACATGTAGTTAAGATAGGCATATCCACTGAAAATAAGAATTTACCTGCTGGAGAATTCTGGTTAGATGGAGAACATGATGGAACAATCAACTTAATTGAGATAAGTTCAGCTCGTCAGGATTCATTCAATAGATCGCTGCTTGTTCAGAAAGATTCACGTCTCTTGCGTGATTTACGAATTATGGCTTATTTCAGACAGTGCTTTCCTAGTGATTCAGATATTTCTACTATCAAGGAACTTGCACATGCCTTGGCCTCTCACTGTCCTTATGAGGTTCCCATTTCAAGCATAAAGGTTCAACATCTTCATTGTGAGGTTCCTATCTCTGAAATATTCTACAGTTTGAATGCTAGTATTGTTGGCTTAGCAGTTGATTTGGAAGGACCTGAAAGTTTACCTTGGTGTCTTGGTCTTGGGATAGTGAGGGGCATCGACACAGCCAAAGGTGTACTCTATGTAATTACACCTGTGCCACATAGTGCTCTGGACAAAGTCAACCTCTTACTGCAGGGTTATATCCAAATTCCTACCTGTTTATTGCAGGCAAGAGATTTTTTTATTCATTTGCTTTCTCAACTGTATACAGTTTTCATTTTTATGGTCAAGGGATGCATATCACCTTATATGTCAGCATCTGTTTTGACTACAAGCTAG 1254 0.3907 MIVLPLYSKQVSLWCHFKNRVMSSSLNENPSPDIYIPKQWSEAAESIAHCSTSTPPIVLICGAKNCGKTTFSRHLLNVLLNTGQYKVAYLDTDVGQPEFTPPGFLSLTIVDRVTPDLKIPCLKTPERCLFFGDVSSKTDPSTYLNYLFAIYGYFRKEYCTSSKEEYPPRTKLPLIVNTPGWVKGVGYDVLVEMLKYICPTHVVKIGISTENKNLPAGEFWLDGEHDGTINLIEISSARQDSFNRSLLVQKDSRLLRDLRIMAYFRQCFPSDSDISTIKELAHALASHCPYEVPISSIKVQHLHCEVPISEIFYSLNASIVGLAVDLEGPESLPWCLGLGIVRGIDTAKGVLYVITPVPHSALDKVNLLLQGYIQIPTCLLQARDFFIHLLSQLYTVFIFMVKGCISPYMSASVLTTS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0971 417 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 62 265 IPR032319 -
Lal17g0971 417 Gene3D - 35 268 IPR027417 -
Lal17g0971 417 PANTHER OS01G0354700 PROTEIN 25 386 - -
Lal17g0971 417 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 25 386 IPR045116 GO:0006396|GO:0051731
Lal17g0971 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 114 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0971 Lal-Chr17 7872646 7876934 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0971 K06947 - gmx:100775314 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0971 17 7872646 7876934 Lal17g0971 17 7872646 7876934 ECH