Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0843 ATGGCTTCCCCTTCTGAACCGGAGAACCTATCACCCAACGTATACATTCCAGAAGAATGGTCCGACGCCGCACACTCCATGGCGTACGATTCACTCACTTCGCCGCCTCCTATTTCTCTTATATGCGGCGCCAAAAATAGCGGCAAGACTACCTTCTCCCGCCATCTTCTCAACATCCTCCTCCACAGCAGATACAGCAAAGTAGCTTATCTGGATACGGATGTTGGCCAGCCTGAGTTTACTCCTCCTGGTTTTCTATCATTAACCATTGTAGACAAAATAACTCCAGATTTGGCGATTCCATGCCTGAAAACGCCAGAGAGATGCCATTTCTATGGCGATGTTTCCTCTAAAAGAGATCTATCAGCATACTTGAACTACATATTTTCCTTATATGATCATTTTCGGAAGGAGTGTTACATGTCTAAAGAGGGAGATAATCCTCCTAGGACTAAGTTGCCTCTTATTGTGAATACTTCTGGTTGGGTGAAAGGTTTTGGTTATAATGTCTTGGTGGATATGCTGAAATACATTGCTCCAACACATGTAGTGAAGATATGCATATCCGCTGTAAATAAGAATCTACCTGCTGGAGCATTCTGGTTAGACGGGGAAAATGATGGAACAGTCAACTTAATTGAGATAAATTCAGCTCGTCAGGACTCATTCAATCGATCGTTGCTTGTTCAGAAGGATGCACGTCTTGTACGAGATTTAAGAATAATGGCTTATTTCAGACAGTGCTTTCCTAGTGATAGGGATATTACTACCATTAAGGAGTTTGCACATGCCTTGTCCACTCACCGTCCTTTTGAAGTTCCCATTGCAAGAATCAAAACTCAACATCTTCATTGTCAGgtcCCAAGCTCTGAAACATTCTACAGTTTAAATGCTAGCATTGTTGGTTTAGCAATTGATTCTGAAGAATCTAAAAAACTACCTTGGTGTATTGGTCTTGGGATTGTGAGAGGTATTGACACATTTAAAGGTGTGTTCTTTGTGATTACACCTGTGCCACAGAGTTCTTTGGAAAAAGTGAACCTCTTCTTACGGGGCTATATACAAATTCCTACATGTTTATTGCAGGTGCAGGGATTCTTATCGCCTTACATGTCTGCCAATGTTTTGTTTACAAGCTAA 1140 0.4149 MASPSEPENLSPNVYIPEEWSDAAHSMAYDSLTSPPPISLICGAKNSGKTTFSRHLLNILLHSRYSKVAYLDTDVGQPEFTPPGFLSLTIVDKITPDLAIPCLKTPERCHFYGDVSSKRDLSAYLNYIFSLYDHFRKECYMSKEGDNPPRTKLPLIVNTSGWVKGFGYNVLVDMLKYIAPTHVVKICISAVNKNLPAGAFWLDGENDGTVNLIEINSARQDSFNRSLLVQKDARLVRDLRIMAYFRQCFPSDRDITTIKEFAHALSTHRPFEVPIARIKTQHLHCQVPSSETFYSLNASIVGLAIDSEESKKLPWCIGLGIVRGIDTFKGVFFVITPVPQSSLEKVNLFLRGYIQIPTCLLQVQGFLSPYMSANVLFTS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0843 379 PANTHER OS01G0354700 PROTEIN 13 368 - -
Sto12g0843 379 Gene3D - 11 249 IPR027417 -
Sto12g0843 379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 94 IPR027417 -
Sto12g0843 379 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 43 246 IPR032319 -
Sto12g0843 379 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 13 368 IPR045116 GO:0006396|GO:0051731
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0843 Sto-Chr12 5287690 5290632 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0843 K06947 - zju:107418513 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0843 12 5287690 5290632 Sto12g0843 12 5287690 5290632 ECH