Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0402 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0403 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0404 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0405 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0406 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0407 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0408 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0409 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0410 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0411 . . . . Adu03g02833 . Aed11g1702 . Aev05g0961 . Ahy15g1022 . Aip05g01051 . . . . . Apr7g0605 Apr2g1173 Arst3g03750 . . . . . . Bva11g02097 Car08g00231 . Cca06g01784 . . . Dod02g1078 . . . . . Gma01g02184 Gma11g00232 . Gma08g00115 Gso1g1850 Gso1g1850 . Gso1g1850 Lal15g0071 . . Lal15g1378 . . Lan18g1102 . . Lan18g1102 . . Lapu3g03561 . Lasa7g04692 . . . . . . . . . Lja2g0003 . Mal6g0192 . Mepo2g04584 . . . . . Mtr5g0311 . . . Phco4g03259 . . . Psa2g4150 . Pste3g01121 . . . . . Pumo6g00523 . Pvu2g2956 . Rops2g00588 . Seca12g06448 . Spst3g01128 . Ssu2g2845 . . Sto11g2074 Tpr2g3861 . Trre7g05400 . Tsu05g00288 . Vian1g03802 . Vifa6g03475 . Vimu11g04368 . Viun3g00613 . Vivi5g05822 . Vra11g0296 .
   
Previous Page 204 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi2g0402 Chr2 3365678 3365953 +
Vvi Vvi2g0403 Chr2 3372330 3372878 +
Vvi Vvi2g0404 Chr2 3382948 3384436 +
Vvi Vvi2g0405 Chr2 3392461 3394348 -
Vvi Vvi2g0406 Chr2 3408484 3411403 +
Vvi Vvi2g0407 Chr2 3412581 3415362 -
Vvi Vvi2g0408 Chr2 3419492 3419893 -
Vvi Vvi2g0409 Chr2 3441922 3442645 +
Vvi Vvi2g0410 Chr2 3445601 3447792 -
Vvi Vvi2g0411 Chr2 3456050 3457688 +
Adu Adu03g02833 Chr03 106879493 106881964 -
Aed Aed11g1702 Chr11 20689123 20690994 +
Aev Aev05g0961 Chr05 6775363 6776968 +
Ahy Ahy15g1022 Chr15 15644356 15646916 +
Aip Aip05g01051 Chr05 15102172 15104723 +
Apr Apr7g0605 Chr7 12634204 12636426 -
Apr Apr2g1173 Chr2 17983825 17986693 +
Arst Arst3g03750 Chr3 105606482 105608996 -
Bva Bva11g02097 Chr11 17428788 17433014 +
Car Car08g00231 Chr08 1842108 1845609 -
Cca Cca06g01784 Chr06 33154483 33157930 +
Dod Dod02g1078 Chr02 13455608 13459735 +
Gma Gma01g02184 Chr01 57110059 57113269 +
Gma Gma11g00232 Chr11 1813026 1816208 -
Gma Gma08g00115 Chr08 987867 991083 +
Gso Gso1g1850 Chr1 55276941 55280152 +
Gso Gso1g1850 Chr1 55276941 55280152 +
Gso Gso1g1850 Chr1 55276941 55280152 +
Lal Lal15g0071 Chr15 494683 497378 -
Lal Lal15g1378 Chr15 15917194 15921214 +
Lan Lan18g1102 Chr18 16083800 16089580 +
Lan Lan18g1102 Chr18 16083800 16089580 +
Lapu Lapu3g03561 Chr3 59049326 59052645 +
Lasa Lasa7g04692 Chr7 680479522 680481989 +
Lja Lja2g0003 Chr2 45413 47539 -
Mal Mal6g0192 Chr6 2729854 2733096 +
Mepo Mepo2g04584 Chr2 54263883 54267124 +
Mtr Mtr5g0311 Chr5 2892574 2897268 -
Phco Phco4g03259 Chr4 53230174 53233376 +
Psa Psa2g4150 Chr2 421363937 421367104 +
Pste Pste3g01121 Chr3 7178278 7181047 -
Pumo Pumo6g00523 Chr6 6518533 6521576 -
Pvu Pvu2g2956 Chr2 45083083 45086055 +
Rops Rops2g00588 Chr2 8450626 8456072 -
Seca Seca12g06448 Chr12 156568201 156571401 +
Spst Spst3g01128 Chr3 14625080 14628253 -
Ssu Ssu2g2845 Chr2 89482659 89485543 +
Sto Sto11g2074 Chr11 19598552 19601084 +
Tpr Tpr2g3861 Chr2 41400291 41404744 +
Trre Trre7g05400 Chr7 60035885 60038509 +
Tsu Tsu05g00288 Chr05 2145228 2151373 -
Vian Vian1g03802 Chr1 61063870 61066114 +
Vifa Vifa6g03475 Chr6 1146540923 1146543502 +
Vimu Vimu11g04368 Chr11 64983265 64985697 +
Viun Viun3g00613 Chr3 3771106 3774076 -
Vivi Vivi5g05822 Chr5 162185685 162189109 +
Vra Vra11g0296 Chr11 2101912 2105754 -