Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01784 ATGGCATTTCAAGAAAAGCAAAACAGGTTTAAGAAGCAGCAAGAGAAGAGTGCATCTGCTTCGCACAATGGAAGAAATCCAGGTTCTATTAAATTCTCTACCGATACCGAAAGACTTCAACATGTTAATAGCATACGCAAAGCCCCCGTTGGGGCTCAGATGAAGCGTGTTATTGATCTCTTATATGAGAATCGACAGGCTTTAACCATAGAGCAAATAAATGAGGCATGTTACGTGGACATGAGAGCTAACAAGGATGTTTTTGAGAGTATGAGGAAAAACCCAAAAATAAAATTTGATGGGGAAAAATTCTCTTACAAGTCGAAGCATGACATTAGGGACAGAAGCCAGCTGCTCTTCTTGGTACGTAAGTTTCCAGAGGGCATTGCTGTCGTTGACCTAAAAGATTCTTACCCAACTGTCATGGAAGACTTGCAGGCTTTGAAAGCTGCAAGGGAGATTTGGCTGTTGTCCAACTTTGATTCACAGGAGGACATTGCGTACCCGAATGACCCTAAAGTGCCCATTAAGGTGGATGATGACCTGAAACAGCTTTTTCGGGGTATTGAATTGCCTCGTGATATGATTGACATAGAGAGGGATCTACAGAAAAATGGAATGAAGCCTGCTACTAACACTGCAAAGAGAAGAAGTGCAGCAGAAATGCAAGGCATATCATCCAAGCCTAAGCCTAAGAAGAAGAAGAATGAAATCACTAAGAGGACCAAGCTGACTAATGCCCATCTTCCAGAGCTTTTTCAGAACCTGAACAATTCCTGA 780 0.4218 MAFQEKQNRFKKQQEKSASASHNGRNPGSIKFSTDTERLQHVNSIRKAPVGAQMKRVIDLLYENRQALTIEQINEACYVDMRANKDVFESMRKNPKIKFDGEKFSYKSKHDIRDRSQLLFLVRKFPEGIAVVDLKDSYPTVMEDLQALKAAREIWLLSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKRRSAAEMQGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLNNS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01784 259 Pfam TFIIE beta subunit core domain 52 112 IPR003166 GO:0006367
Cca06g01784 259 Pfam TFA2 Winged helix domain 2 113 170 IPR040501 -
Cca06g01784 259 PANTHER BNAA02G21830D PROTEIN 27 258 - -
Cca06g01784 259 MobiDBLite consensus disorder prediction 1 32 - -
Cca06g01784 259 PIRSF TFIIE-beta 1 258 IPR016656 GO:0005673|GO:0006367
Cca06g01784 259 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 27 258 IPR016656 GO:0005673|GO:0006367
Cca06g01784 259 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 38 113 IPR003166 GO:0006367
Cca06g01784 259 MobiDBLite consensus disorder prediction 207 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01784 Cca-Chr6 33154483 33157930 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01784 K03137 - gmx:100788089 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01784 06 33154483 33157930 Cca06g01784 06 33154483 33157930 ECH
Cca06g01784 06 33154483 33157930 Cca09g02406 09 49438405 49441669 PCT