Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0411 ATGGCCTTGCAAGAAAGTTTAGCTAAATTCAAGAAGCAACAAGAAAAGTGCCAATCGACTCTCACCAGCATTGCAGCCAAGGCAGGATCTTCTAAGCCCACAGTGCCTCAGAAGTTTACCCCAGCAGCTCCTACAAAACCTCCTACACCTGCAGTAAAATTCTCCAATGATACTGAGAGACTCCAACATATTAACAGCATAAGGAAAGCCCCTGTTGGAGCTCAGATTAAACGTGTCATAGACTTGCTGCTAGAGACAAGGCAAGCCTTTACACCGGAACAAATAAACGAAGCATGTTATGTTGATACCAATGCCAACAAAGCTGTCTTTGACAGTTTGAGGAATAATCCAAAAGTGAGCTATGATGGGAAGCGCTTTGCGTACAAGTCCAAGCATGACTTAAAGGACAGGAGTCAGCTGCTTGTCTTAGTACGAAAATTTCCAGAGGGCATTGCAGTCATTGACCTTAAGGACTCATACCCAAGTGTGATGGAAGATTTACAGGCTTTGAAAGCTGCAGGGCAGGTTTGGCTGCTGTCGAACTTTGATTCACAGGAGGACATTGCTTATCCAAATGATCCCCGGGTGCCCATCAAAGTGGATGATGACCTCAAGCAGTTCTTCAGAACCATTGAACTTCCCCGTGACATGCTTGATATAGAGAAGGATCTGCAGAAGAATGGGATGAAGCCTGCTACAAACACTGCCAAGAGGAGGGCCATGGCTCAGGTTCATGGAATTGCCTCCAAGTCTAAGCCCAAGAAGAAGAAGCATGAAATCAGCAAGAGAACCAAGCTCACGAATGCCCACCTTCCAGAGCTCTTCCAGAATCTTAAGGATGGTGATTCTTCAAAGTAG 858 0.4557 MALQESLAKFKKQQEKCQSTLTSIAAKAGSSKPTVPQKFTPAAPTKPPTPAVKFSNDTERLQHINSIRKAPVGAQIKRVIDLLLETRQAFTPEQINEACYVDTNANKAVFDSLRNNPKVSYDGKRFAYKSKHDLKDRSQLLVLVRKFPEGIAVIDLKDSYPSVMEDLQALKAAGQVWLLSNFDSQEDIAYPNDPRVPIKVDDDLKQFFRTIELPRDMLDIEKDLQKNGMKPATNTAKRRAMAQVHGIASKSKPKKKKHEISKRTKLTNAHLPELFQNLKDGDSSK* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0411 285 Pfam TFIIE beta subunit core domain 74 133 IPR003166 GO:0006367
Vvi2g0411 285 MobiDBLite consensus disorder prediction 26 50 - -
Vvi2g0411 285 MobiDBLite consensus disorder prediction 232 285 - -
Vvi2g0411 285 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 1 282 IPR016656 GO:0005673|GO:0006367
Vvi2g0411 285 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 60 135 IPR003166 GO:0006367
Vvi2g0411 285 MobiDBLite consensus disorder prediction 249 263 - -
Vvi2g0411 285 Pfam TFA2 Winged helix domain 2 135 192 IPR040501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0411 Vvi-Chr2 3456050 3457688 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0411 K03137 - vvi:100259920 554.288