Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05822 ATGTCTTTGCAAGGACAATTGGATAGGTTCAAGAAACAGCAAGAGAAGTGTCAATCGACGCTTTCGAGCATTGCGGCGAGTCAGGTTGGTGGGAGAAAGCCTAGTAATGCAGTAGTTGGAAATGCGGCGAGCAATGGGAGAAATCAGACAAGTGGTATCAAGTTCTCGAAAGATACGGAGAGGCTTCAGCAGATTAATAGTATACGTAAAGCTCCTGTTGGTGCGCAGATGAAGCGTGTTATTGATCTATTGCTTGAGACGCGGAAGGCGTATACTCCAGAGCAAATAAATGAAGTATGCTATGTTGACATGAGGGCTAACAAAGATGTTTTTGACAATCTGAGGAAAAACCCAAAAGTACACTATGACGGGCAACGATTCTCTTACAAGGCAAAGTATGGCCTTAAGGATAAAACTGAGCTTCTTCAACTGGTACGTAAGTATCCAGAGGGCATTGCTGTTATTGACCTCAAGGATGCTTACCCCGTTGTGATGGAAGACTTACAGGCTTTGAAAGCTGCAGGGCAGATTTGGCTGCTTGCCAACTTCGATTCGCAGGAAGACGTTGCATACCCGAATGACCCCAAAGCAAACATTAAGGTGGATGATGACCTAAAACAGCTATTCCGGAGCATTGAGTTGCCTCGTGATATGATTGATATAGAGAGGGATCTTCAAAAGAATGGAATGAAGCCTGCCACCAACACTGCAAAGAGGAGGAGTGCAGCACAAATTGAAGGCATTTCTTCCAAGCCTAAGCCTAAGAAGAAGAAGAGTGAAATCACCAAAAGAACCAAGCTGACCAATGCCCATCTTCCGGAGCTTTTTCGGAACCTAAACAATCCCTGA 849 0.4476 MSLQGQLDRFKKQQEKCQSTLSSIAASQVGGRKPSNAVVGNAASNGRNQTSGIKFSKDTERLQQINSIRKAPVGAQMKRVIDLLLETRKAYTPEQINEVCYVDMRANKDVFDNLRKNPKVHYDGQRFSYKAKYGLKDKTELLQLVRKYPEGIAVIDLKDAYPVVMEDLQALKAAGQIWLLANFDSQEDVAYPNDPKANIKVDDDLKQLFRSIELPRDMIDIERDLQKNGMKPATNTAKRRSAAQIEGISSKPKPKKKKSEITKRTKLTNAHLPELFRNLNNP 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05822 282 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 61 136 IPR003166 GO:0006367
Vivi5g05822 282 Pfam TFA2 Winged helix domain 2 136 193 IPR040501 -
Vivi5g05822 282 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 1 280 IPR016656 GO:0005673|GO:0006367
Vivi5g05822 282 MobiDBLite consensus disorder prediction 32 51 - -
Vivi5g05822 282 MobiDBLite consensus disorder prediction 231 282 - -
Vivi5g05822 282 Pfam TFIIE beta subunit core domain 75 133 IPR003166 GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05822 Vivi-Chr5 162185685 162189109 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05822 K03137 - gmx:100802433 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05822 5 162185685 162189109 Vivi5g05822 5 162185685 162189109 ECH
Vivi2g03830 2 149961624 149965169 Vivi5g05822 5 162185685 162189109 PCT