Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0296 ATGGCGTTTCAGGAAAAGGGAAACAGGTTTAAAAGGCAGCCGGAGAAGAATTCTTCGGCTTCAAACAATGGAAGAACTCCAGGTGCTGTAAAATTCTCGAACGACACGGAAAGACTTCAACATGTTAATAGCATACGCAAAGCCCCAGTAGGGGCTCAGATGAAGCGTGTTATTGATCTCCTTTTTGAGACCCGAAAGGCTTTAACGATGGAGCAAATAAATGAAGCTTGTTATGTGGACATGAGAGCTAATAAAGATGTTTTTGAGAGTATGAGGAAAAACCCAAAAGTAAAATATGATGGGGAAAGATTCTCTTACAAGTCCAAGCATGATGTTAGGGACAAAAGTCAGCTGCTTGTCCTGGTGCGTAAGTTTCCAGAGGGCATTGCTGTTGTTGACCTAAAAGATTCTTACCCAACTGTGATGGAAGACTTGCAGGCTTTGAAAGCTTCAAGGGAGGTTTGGCTGTTATCTAACTTTGACTCACAAGAGGACATTGCCTACCCGAATGATCCTAAAGTGCCCATTAAGGTGGATGATGACCTAAAACAGCTTTTTCGAGAGATTGAATTGCCCCGTGATATGATTGACATAGAGAGGGATCTACAAAAGAATGGAATGAAGCCTGCTACTAACACTGCAAAGAGGAGGAGTGCAGCACAAATGGAAGGCATTTCAACAAAGCCTAAACCTAAGAAGAAGAAGAATGAAATCACTAAGAGGACCAAGCTGACTAATGCTCATCTTCCGGAGCTTTTTCAGAATTTAAAATGA 774 0.4186 MAFQEKGNRFKRQPEKNSSASNNGRTPGAVKFSNDTERLQHVNSIRKAPVGAQMKRVIDLLFETRKALTMEQINEACYVDMRANKDVFESMRKNPKVKYDGERFSYKSKHDVRDKSQLLVLVRKFPEGIAVVDLKDSYPTVMEDLQALKASREVWLLSNFDSQEDIAYPNDPKVPIKVDDDLKQLFREIELPRDMIDIERDLQKNGMKPATNTAKRRSAAQMEGISTKPKPKKKKNEITKRTKLTNAHLPELFQNLK* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0296 257 PANTHER BNAA02G21830D PROTEIN 23 256 - -
Vra11g0296 257 MobiDBLite consensus disorder prediction 14 30 - -
Vra11g0296 257 MobiDBLite consensus disorder prediction 1 31 - -
Vra11g0296 257 Pfam TFIIE beta subunit core domain 52 112 IPR003166 GO:0006367
Vra11g0296 257 Pfam TFA2 Winged helix domain 2 113 170 IPR040501 -
Vra11g0296 257 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 38 113 IPR003166 GO:0006367
Vra11g0296 257 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 23 256 IPR016656 GO:0005673|GO:0006367
Vra11g0296 257 MobiDBLite consensus disorder prediction 208 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0296 Vra-Chr11 2101912 2105754 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0296 K03137 - gmx:100788089 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0296 11 2101912 2105754 Vra11g0296 11 2101912 2105754 ECH
Vra11g0296 11 2101912 2105754 Vra7g3478 7 54129158 54132563 PCT