Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00613 ATGGCGTTGCAGGAGAAGTTAGACAAGTTCAAGAAGCAGCAAGAGAAGTGCCAGACGACACTGTCAAGCATTGCAGCAAGCAAGGCCGCAGCAAGCCAAAAATCTGCCTCACATGGCTCGGCCAATGGAAAAAACGCGCCCCATCCAGTTAAGTTTTCGAACGACACCGAGAGGCTTCAGCATATTAACAGCATACGTAAAGCCCCGGTGGGTGCTCAGATGAAACGTGTTATTGATCTCCTTCTAGAGACAAGACAAGCTTTAACACCGGAGCAGATCAACCAGGCATGCTACGTTGACATAAAGGCTAACAAAGATGTCTTTGAGAATCTTAGGAAAAACCCGAAAGTAAATTATGATGGCCAACGATTCTCTTACAAGTCAAAGTACGGTCTTAAGGACAAAACAGAACTTCTTCAACTGATACGTAAGTATCCCGAGGGCCTTGCTGTTATTGACTTAAAGGATGCTTACCCCACTGTGATGGAAGACTTGCAGGCTTTGAAAGGTGCGGGGCAGATTTGGCTGCTGTCCAACTTTGATTCACAGGAAGACATTGCCTACCCTAACGACCCCAAATTGCACATTAAGGTGGATGATGATCTAAAACAGCTTTTCCGGAGTATTGAATTGCCTCGTGATATGATTGATATAGAGAAGGATCTTCAGAAGAATGGAATGAAGCCCGCCACCAACACTGCAAAAAGGAGGAGTGCAGCACAAATTCAAGGCATTTCTTCCAAGCCCAAGCCAAAGAAGAAGAAGAGTGAAATCAACAAAAGAACGAAGCTGACCAATGCTCATCTTCCAGAGCTTTTTCAAAACTTGAACAATTCCTGA 840 0.4476 MALQEKLDKFKKQQEKCQTTLSSIAASKAAASQKSASHGSANGKNAPHPVKFSNDTERLQHINSIRKAPVGAQMKRVIDLLLETRQALTPEQINQACYVDIKANKDVFENLRKNPKVNYDGQRFSYKSKYGLKDKTELLQLIRKYPEGLAVIDLKDAYPTVMEDLQALKGAGQIWLLSNFDSQEDIAYPNDPKLHIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAKRRSAAQIQGISSKPKPKKKKSEINKRTKLTNAHLPELFQNLNNS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00613 279 Pfam TFIIE beta subunit core domain 72 130 IPR003166 GO:0006367
Viun3g00613 279 MobiDBLite consensus disorder prediction 21 42 - -
Viun3g00613 279 PIRSF TFIIE-beta 1 278 IPR016656 GO:0005673|GO:0006367
Viun3g00613 279 MobiDBLite consensus disorder prediction 21 53 - -
Viun3g00613 279 MobiDBLite consensus disorder prediction 226 245 - -
Viun3g00613 279 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 1 277 IPR016656 GO:0005673|GO:0006367
Viun3g00613 279 MobiDBLite consensus disorder prediction 225 269 - -
Viun3g00613 279 Pfam TFA2 Winged helix domain 2 133 190 IPR040501 -
Viun3g00613 279 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 58 133 IPR003166 GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00613 Viun-Chr3 3771106 3774076 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00613 K03137 - gmx:100802433 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00613 3 3771106 3774076 Viun3g00613 3 3771106 3774076 ECH
Viun2g02560 2 31693034 31696671 Viun3g00613 3 3771106 3774076 PCT