Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06448 ATGGCGTTGCAAGAACAGCTAGACAGATTCAAAAAGCAGCAGGAGAGGTGCCAGTCAACCATGTCCAGCATTGCAGCCACCAAGGCTGCTGCAAGCCGCAAATCCACTGCTCCAGTAGCTGCTGCTGCAGCCTCAGCCAATGGAAGAAATCCAGTCCCTGCTGTCAAATTCTCAAACGACACTGAGAGGCTTCAGCATATTAACAGCATACGCAAAGCCCCTGTTGGTGCTCAGATGAAGCGTGTTATTGATCTCCTGCTAGAGACACGACAAGCTTTTACGCCAGAGCAAATTAATGAAGCATGCTATGTTGACATGAGGACTAACAAAGATGTCTTTGAAAATCTGAGGAAAAACCCAAAAGTAAACTATGATGGGCAACGATTCTCTTACAAGTCAAAGTATGGCCTTAAGGACAAAACTGAGCTTCTTCAACTGATACGCAAGTTTCCAGAGGGCATTGCTGTTATTGACTTAAAGGATGCTTACCCTACTGTGATGGAAGACTTGCAGGCTTTGAAAGCTGCAGGGCAGATTTGGCTGCTGTCCAACTTTGATTCACAGGAAGACATTGCCTACCCTAATGACCCCAAAGTGCATATTAAGGTGGATGATGACCTAAAACAGCTTTTCCGGAGTATCGAATTGCCCCGTGACATGATTGATATAGAGAAGGATCTTCAAAAGAATGGAATGAAGCCCGCTACCAACACGGCAAAGAGGAGGAGTGCAGCACAAATTCAAGGCATTTCTTCCAAGCCGAAGCCTAAGAAGAAGAAGAGTGAAATCAGCAAGAGAACCAAGTTGACCAATGCCCATCTTCCGGAGCTTTTTCAGAACTTAAACAATTCCTGA 855 0.4538 MALQEQLDRFKKQQERCQSTMSSIAATKAAASRKSTAPVAAAAASANGRNPVPAVKFSNDTERLQHINSIRKAPVGAQMKRVIDLLLETRQAFTPEQINEACYVDMRTNKDVFENLRKNPKVNYDGQRFSYKSKYGLKDKTELLQLIRKFPEGIAVIDLKDAYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPKVHIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAKRRSAAQIQGISSKPKPKKKKSEISKRTKLTNAHLPELFQNLNNS. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06448 284 MobiDBLite consensus disorder prediction 229 284 - -
Seca12g06448 284 Pfam TFIIE beta subunit core domain 77 135 IPR003166 GO:0006367
Seca12g06448 284 PIRSF TFIIE-beta 1 283 IPR016656 GO:0005673|GO:0006367
Seca12g06448 284 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 63 138 IPR003166 GO:0006367
Seca12g06448 284 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 1 282 IPR016656 GO:0005673|GO:0006367
Seca12g06448 284 MobiDBLite consensus disorder prediction 231 250 - -
Seca12g06448 284 Pfam TFA2 Winged helix domain 2 138 195 IPR040501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06448 Seca-Chr12 156568201 156571401 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06448 K03137 - gmx:100802433 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06448 12 156568201 156571401 Seca12g06448 12 156568201 156571401 ECH
Seca12g06448 12 156568201 156571401 Seca12g06448 12 156568201 156571401 PCT