Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03475 ATGTCTTTGCAAGGACAATTGGATAGGTTCAAGAAACAGCAAGAGAAGTGTCAATCGACGCTTTCGAGCATTGCGGGGAGCCAGGTTGGTGGTAGAAAACCTAGTAATCCAGTTGCTGCACATGCGTCGATCAATGGGAGAAATCAGACTACTGGTGTCAAATTCTCGAAAGATACGGAGAGGCTTCAGCAGATTAATAGTATACGTAAAGCTCCTGTTGGTGCTCAGATGAAGCGTGTTATTGATCTTTTGCTTGAGACGCGGAAGGCGTATACTCCAGAGCAAATTAATGAAGTATGCTATGTTGACATGCGGGCTAACAAAGATGTTTTTGACAATCTGAGGAAAAACCCAAAAGTATACTATGACGGGCAACGATTCTCTTACAAGGCAAAGTATGGCCTTAAGGATAAAACTGAGCTTCTTCAACTGGTACGTAAGTATCCAGAGGGCATTGCTGTTATTGACCTAAAGGATGCTTATCCCTCTGTGATGGAAGACTTACAGGCTTTGAAAGCTGCAGGGCAGATTTGGCTGCTTGCCAACTTCGATTCACAGGAAGATGTTGCGTACCCGAATGACCCCAAAGCAAACATTAAGGTGGATGATGACCTAAAACAGCTATTCCGGAGTATTGAGTTGCCTCGTGACATGATTGATATAGAGAAGGATCTTCAAAAGAATGGAATGAAGCCTGCTACCAACACTGCAAAGAGGAGGAGTGCAGCACAAATTGATGGCCCTTCTTCCAAGCCCAAGCCTAAGAAGAAGAAGAATGAAATCACCAAGAGAACCAAGCTGACCAATTCCCATCTTCCAGAGCTTTTTCGGAACCTAAACAATTCGTGA 849 0.4393 MSLQGQLDRFKKQQEKCQSTLSSIAGSQVGGRKPSNPVAAHASINGRNQTTGVKFSKDTERLQQINSIRKAPVGAQMKRVIDLLLETRKAYTPEQINEVCYVDMRANKDVFDNLRKNPKVYYDGQRFSYKAKYGLKDKTELLQLVRKYPEGIAVIDLKDAYPSVMEDLQALKAAGQIWLLANFDSQEDVAYPNDPKANIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAKRRSAAQIDGPSSKPKPKKKKNEITKRTKLTNSHLPELFRNLNNS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03475 282 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 1 280 IPR016656 GO:0005673|GO:0006367
Vifa6g03475 282 MobiDBLite consensus disorder prediction 266 282 - -
Vifa6g03475 282 MobiDBLite consensus disorder prediction 224 282 - -
Vifa6g03475 282 Pfam TFA2 Winged helix domain 2 136 193 IPR040501 -
Vifa6g03475 282 Pfam TFIIE beta subunit core domain 75 133 IPR003166 GO:0006367
Vifa6g03475 282 MobiDBLite consensus disorder prediction 229 243 - -
Vifa6g03475 282 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 61 136 IPR003166 GO:0006367
Vifa6g03475 282 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03475 Vifa-Chr6 1146540923 1146543502 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03475 K03137 - gmx:100802433 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03475 6 1146540923 1146543502 Vifa6g03475 6 1146540923 1146543502 ECH
Vifa1g07880 1 1229846244 1229849340 Vifa6g03475 6 1146540923 1146543502 PCT