Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2845 aTGGCGTTTCAGGAAAAGCAAAACAGGTTTAAAAAGCAGCAAGAGAAGAGTGCGTCTGCTTCACACAATGGAAGAACTTCAGCTCCTATCAAATTCTCCAACGATACGGAAAGGCTTCAACATGTTAACAGCATACGCAAAGCCCCCGTTGGGGCTCAGATGAAGCGTGTTATTAATCTCCTATTTGagACCCGAAAGGCTTTAACGATAGAGCAAATAAATGAAGCATGTTACGTGGACATGAAAGCTAACAAAGATGTTTTTGACAGTATGAGGAAAAACCCAAAAGTAAAATATGATGGGGAAAGATTCTCTTACAAGTCGAAGCATGACGTTAGGGACAAAAGTCAGCTGCTTTTCCTGGTACGTAAGTTTCCAGAGGGCATTGCTGTTGTTGACCTAAAAGATTCTTACCCAACTGTGATGGAAGATTTGCAgGCTTTGAAAGCTGCAAGGGAGATTTGGCTGTTGTCCAACTTTGATTCACAGGAGGACATTGCCTACCCAAATGACCCTAAAGTGCCCATTAAGGTGGATGATGACCTAAAACAGCTTTTTCGGGGGATTGAATTGCCTCGTGATATGATTGATATAGAGAGGGATCTACAAAAAAATGGAATGAAGCCTGCTACTAACACTGCAAAGAGGAGGAGTGCAGCAGAGATGCAAGGCATTTCATCCAAGCCTAAAcctaagaagaagaagaatgaaatCACTAAGAGGACCAAGCTGACTAATGCCCATCTTCCAGAgctttttcaaaacttaaacaaTTCCTGA 780 0.4013 MAFQEKQNRFKKQQEKSASASHNGRTSAPIKFSNDTERLQHVNSIRKAPVGAQMKRVINLLFETRKALTIEQINEACYVDMKANKDVFDSMRKNPKVKYDGERFSYKSKHDVRDKSQLLFLVRKFPEGIAVVDLKDSYPTVMEDLQALKAAREIWLLSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKRRSAAEMQGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLNNS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2845 259 Pfam TFA2 Winged helix domain 2 113 170 IPR040501 -
Ssu2g2845 259 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 38 113 IPR003166 GO:0006367
Ssu2g2845 259 Pfam TFIIE beta subunit core domain 52 112 IPR003166 GO:0006367
Ssu2g2845 259 MobiDBLite consensus disorder prediction 1 32 - -
Ssu2g2845 259 PIRSF TFIIE-beta 1 258 IPR016656 GO:0005673|GO:0006367
Ssu2g2845 259 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 17 258 IPR016656 GO:0005673|GO:0006367
Ssu2g2845 259 MobiDBLite consensus disorder prediction 207 259 - -
Ssu2g2845 259 PANTHER BNAA02G21830D PROTEIN 17 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2845 Ssu-Chr2 89482659 89485543 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2845 K03137 - gmx:100788089 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2845 2 89482659 89485543 Ssu2g2845 2 89482659 89485543 ECH
Ssu2g2845 2 89482659 89485543 Ssu5g3029 5 77709912 77712529 PCT