Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0407 ATGAACTCCTATAAGGATATATATCCTCAGGCTGAAGATGTTATCAAAGAGCAGGCAGGTGTTGTCGCCGTTGCTGCTCACCCATCTGGCATCATCGCTGCTTCAGTTTCGTTAGACAGATTCGTTCGCGTTTTTTATGTCGATACCAATGCTACAATCGCCACTCTGGAAGCTCCTCCCTCGGAAGTGTGGCAAATGCAGTTTGATCCTAAGGGTTCTATTCTAGCAGTTGCAGAGGAAGAGTTTCCAAACGCTTTCAAGTTGTGGTACGATTCTCTAGGAGGTGATGCCATTGGCATGATGTGGGAGAGATCATCTTCAAGGAAACGGGGAAGAAGCTGA 342 0.4678 MNSYKDIYPQAEDVIKEQAGVVAVAAHPSGIIAASVSLDRFVRVFYVDTNATIATLEAPPSEVWQMQFDPKGSILAVAEEEFPNAFKLWYDSLGGDAIGMMWERSSSRKRGRS* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0407 113 Pfam Nrap protein domain 6 63 110 IPR035371 -
Vvi2g0407 113 PANTHER WD REPEAT-CONTAINING PROTEIN 61 13 78 - -
Vvi2g0407 113 Gene3D - 5 99 IPR015943 GO:0005515
Vvi2g0407 113 SUPERFAMILY WD40 repeat-like 17 81 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0407 Vvi-Chr2 3412581 3415362 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0407 K12602 - vvi:100257752 110.538