Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0003 ATGGCGTTGCAAGAAAAGCTTGACAGGTTCAAAAGGCAGCAAGAGAAGTGTCAATCGACCCTCACCAGCATTGCATCTACCAAGGCTTCTGCTACACAAAATGGCCGAAGAACACCGACACCAACACCACCCGCTCCTGTTCCTGTCAAATTCTCCAACGATACTGAGAGACTTCAGCATATTAACAGTATACGTAAAGCCCCCGTTGGAGCTCAGATGAAGCGTGTTATTGCTCTCCTATTTGAGTCTCGACAGGCTTTCACAATGGAGCAAATAAATGAAGCATGCTATGTGGACATGAGAGCTAACAAAGATGTTTTTGACAGTATGAGGAAAAACCCGAAAGTCAAATTTGATGGGGAGAAATTCTCTTACAAGTCAAAGCATGATCTTAGGGACAAAAAAGAGCTGCTCTTTCTGATACGCAAGTTTCCAGAGGGCATTGCTGTTATTGACCTAAAGGATTCTTACCCAACTGTGTTGGAGGACTTGCAGGCTTTGAAAGCTGCAAGGGAGATTTGGCTGCTGTCCAACTTTGATTCCCAGGAAGACATTGCCTACCCTAATGATCCTAAAGTTCCCATTAAGGTGGATGATGACCTAAAACAGCTTTTCCGGGGGATTGAATTGCCTCGTGATATGATTGATATTGAGAGGGATCTCCAAAAAAACGGAATGAAGCCTGCTACTAACACAGCAAAGAGAAGGAGTGCAGCGCAAATGCAAGGCATTTCTTCCAAGCCTAAACCTAAGAAGAAGAAGAATGAAATCACCAAGAGGACCAAGCTGACTAATGCCCATCTTCCAGAGCTTTTTCAGAACTTAAAAGATTCTTGA 837 0.4373 MALQEKLDRFKRQQEKCQSTLTSIASTKASATQNGRRTPTPTPPAPVPVKFSNDTERLQHINSIRKAPVGAQMKRVIALLFESRQAFTMEQINEACYVDMRANKDVFDSMRKNPKVKFDGEKFSYKSKHDLRDKKELLFLIRKFPEGIAVIDLKDSYPTVLEDLQALKAAREIWLLSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKRRSAAQMQGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLKDS* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0003 278 PANTHER TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA 1 273 - -
Lja2g0003 278 PIRSF TFIIE-beta 2 277 IPR016656 GO:0005673|GO:0006367
Lja2g0003 278 MobiDBLite consensus disorder prediction 1 46 - -
Lja2g0003 278 MobiDBLite consensus disorder prediction 1 15 - -
Lja2g0003 278 MobiDBLite consensus disorder prediction 16 38 - -
Lja2g0003 278 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 1 273 IPR016656 GO:0005673|GO:0006367
Lja2g0003 278 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 57 132 IPR003166 GO:0006367
Lja2g0003 278 Pfam TFA2 Winged helix domain 2 132 189 IPR040501 -
Lja2g0003 278 Pfam TFIIE beta subunit core domain 71 130 IPR003166 GO:0006367
Lja2g0003 278 MobiDBLite consensus disorder prediction 224 278 - -
Lja2g0003 278 MobiDBLite consensus disorder prediction 225 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0003 Lja-Chr2 45413 47539 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0003 K03137 - gmx:100788089 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0003 2 45413 47539 Lja2g0003 2 45413 47539 ECH
Lja2g0003 2 45413 47539 Lja4g0448 4 3655329 3659448 PCT