Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04368 ATGGTTCTTGTGTTCGCTTTTCAGATGGCGTTGCAGGAGAGGTTAGACAAGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCGACACTGTCAAGCATTGCAGCAAGCCAAAAGTCTGCCTCACATGGCTCGACCAATGGAAAAAACGCGCCCCCTGCGGTCAAGTTTTCGAACGACACGGAGAGGCTTCAGCATATTAACAGCATACGTAAAGCCCCGGTGGGTGCTCAGATGAAGCGTGTTATTGATCTCCTTCTAGAGATAGTCACCCGCATGGTAGAAGAATTAAGATGGAGTTTTGCTTGTCACTGCATGCTTTGGGTTACAAGACAAGCTTTAACACCCGAGCAGATAAACCAGGCATGCTATGTTGACATAAAGGCTAACAAAGATGTCTTTGAGAATCTTAGGAAAAACCCGAAAGTGAATTATGATGGCCAACGATTCTCTTACAAGTCAAAGTACGGTCTTAAGGACAAAACAGAACTTCTTCAACTGATACGTAAGTATCCAGAGGGCCTTGCTGTTATTGACTTAAAGGATGCTTACCCCACTGTGATGGAAGACTTGCAGGCTTTGAAAGCTGCGGGGCAGATTTGGCTGCTGTCCAACTTTGATTCACAGGAAGACATTGCCTACCCTAACGACCCCAAATTGCACATTAAGGTGGATGATGATCTAAAACAGCTTTTCCGGAGTATTGAATTGCCTCGTGATATGATTGATATAGAGAAGGATCTTCAAAAGAATGGAATGAAGCCCGCCACCAACACTGCAAAGAGGAGGAGTGCAGCACAAATTCAAGGCATTTCTTCCAAGCCTAAGCCTAAGAAGAAGAAGAGTGAAATCAACAAGAGAACGAAGCTGACCAATGCTCATCTTCCAGAGCTTTTTCAAAACCTAAACAATTCCTGA 912 0.4452 MVLVFAFQMALQERLDKFKKQQEKCQATLSSIAASQKSASHGSTNGKNAPPAVKFSNDTERLQHINSIRKAPVGAQMKRVIDLLLEIVTRMVEELRWSFACHCMLWVTRQALTPEQINQACYVDIKANKDVFENLRKNPKVNYDGQRFSYKSKYGLKDKTELLQLIRKYPEGLAVIDLKDAYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPKLHIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAKRRSAAQIQGISSKPKPKKKKSEINKRTKLTNAHLPELFQNLNNS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04368 303 Pfam TFIIE beta subunit core domain 110 154 IPR003166 GO:0006367
Vimu11g04368 303 Pfam TFA2 Winged helix domain 2 157 214 IPR040501 -
Vimu11g04368 303 MobiDBLite consensus disorder prediction 249 303 - -
Vimu11g04368 303 MobiDBLite consensus disorder prediction 250 269 - -
Vimu11g04368 303 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 9 301 IPR016656 GO:0005673|GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04368 Vimu-Chr11 64983265 64985697 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04368 K03137 - gmx:100802433 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04368 11 64983265 64985697 Vimu11g04368 11 64983265 64985697 ECH
Vimu7g02468 7 21101707 21105134 Vimu11g04368 11 64983265 64985697 PCT