Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01238 ATGATGGCTCACCTTCTCCACACTCCCTTCATCCCTTCCTCCTCCTCAGCGCTCCGCCGCACCCCCATTCTCCCCCGCAAAACGACGACTCGCCTCGTCGTTCGGGCCAAGATCCGGGAGATTTTCATGCCGGCACTGAGCTCCACGATGACCGAGGGCAAAATCGTCTCCTGGACCAAATCCGAGGGCGACAAGCTCTCCAAGGGCGACAGCGTCGTCGTCGTCGAGTCTGACAAGGCCGACATGGACGTCGAGACCTTCTACGACGGCTACCTCGCCGCCATCGTAGTCGAGGAGGGCGGCGTCGCCGCCGTCGGATCCCCCATCGCATTCCTCGCCGAAACCGAGGACGAAATTCCTCAAGCCAAGTCCAAAGTCTCTTCCTCTTCCTCTTCCTCTTCCGCACCCGCACCTGCACCCGTACCGGCACCGCCTGTGGAATCGCAACCGGAAAAGGTTGCGGCGCCCGTCGCGGCGGCGGTTGCAGCTCCGGTCGCTGCGTCCAGTCATCCTGCTTCGGAGGGAGGGAAGAGGATTGTTGCGTCGCCTTATGCGAAGAAGCTCGCCAAGGAGTTGAAGGTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCTAAAGATGTTGAGGCGTTTGCAGCTTCTGGGAATACGGCAGCGGTGGCAGCAGCACCAGGGAAGAGTGCAGCACCTGCCGGAGTGGAGTTGGGATCTGTGGTGCCTTTCACCACAATGCAGAGTGCTGTGAGTAGGAACATGGTGGAGAGTTTGGCGGTTCCCACTTTCAGAGTTGGTTACACCATCACCACAGATGCACTTGATGCCTTGTACAAGAAGATTAAGTCAAAGGGAGTTACGATGACAGCATTGCTTGCCAAGGCTACTGCACTTGCACTGGTTAAACACCCTGTTATGAACTCCAGTTGTAGAGATGGTAATAGCTTTACATATAATAGCAGCATCAATGTTGCAGTTGCTGTGGCTACAGACGGCGGACTGATTACACCAGTGCTTCAAGATGCTGATAAGGTTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGATAAGGCCCGAGCCAAGCAGCTGCAACCTCATGAATACACCACTGGTACTTTCACTCTTTCCAATCTGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTGGAGCAATAATGGCTGTTGGAGCATCACAGCCAACTCTTGTGGCTACCAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGGTCAATGTTACAGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCATTCTTGCAAACCCTGTCACAGATTATTGAGGACCCCAAAGATCTTACTTTCTAG 1389 0.54 MMAHLLHTPFIPSSSSALRRTPILPRKTTTRLVVRAKIREIFMPALSSTMTEGKIVSWTKSEGDKLSKGDSVVVVESDKADMDVETFYDGYLAAIVVEEGGVAAVGSPIAFLAETEDEIPQAKSKVSSSSSSSSAPAPAPVPAPPVESQPEKVAAPVAAAVAAPVAASSHPASEGGKRIVASPYAKKLAKELKVELGRIVGTGPMGRIVAKDVEAFAASGNTAAVAAAPGKSAAPAGVELGSVVPFTTMQSAVSRNMVESLAVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALVKHPVMNSSCRDGNSFTYNSSINVAVAVATDGGLITPVLQDADKVDVYSLSRKWKELVDKARAKQLQPHEYTTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASQPTLVATKDGRIGMKNQMQVNVTADHRVIYGADLASFLQTLSQIIEDPKDLTF 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01238 462 Gene3D - 239 461 IPR023213 -
Pumo3g01238 462 Gene3D - 167 221 IPR036625 GO:0016746
Pumo3g01238 462 MobiDBLite consensus disorder prediction 122 136 - -
Pumo3g01238 462 Gene3D - 34 137 - -
Pumo3g01238 462 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 63 92 IPR003016 -
Pumo3g01238 462 SUPERFAMILY CoA-dependent acyltransferases 243 460 - -
Pumo3g01238 462 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 34 137 - -
Pumo3g01238 462 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 31 461 IPR045257 GO:0006086|GO:0045254
Pumo3g01238 462 CDD lipoyl_domain 40 110 - -
Pumo3g01238 462 FunFam Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex 174 221 - -
Pumo3g01238 462 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 243 460 IPR001078 GO:0016746
Pumo3g01238 462 SUPERFAMILY Single hybrid motif 37 130 IPR011053 -
Pumo3g01238 462 FunFam Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex 238 461 - -
Pumo3g01238 462 Pfam Biotin-requiring enzyme 40 110 IPR000089 -
Pumo3g01238 462 ProSiteProfiles Biotinyl/lipoyl domain profile. 38 113 IPR000089 -
Pumo3g01238 462 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 172 218 IPR036625 GO:0016746
Pumo3g01238 462 MobiDBLite consensus disorder prediction 122 150 - -
Pumo3g01238 462 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 180 217 IPR004167 GO:0016746
Pumo3g01238 462 Pfam e3 binding domain 179 214 IPR004167 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01238 Pumo-Chr3 19963815 19969328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01238 2 462 Acyl Lipid Metabolism Gene Families AT1G34430 77.897 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01238 K00627 - gmx:100786455 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01238 3 19963815 19969328 Pumo3g01238 3 19963815 19969328 ECH