Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02814 ATGGCTCACCTTCTCCACACTTCCTTCGTCCCCTCCTCCTCCTCGCTTCGCCGCCCCGCCGTTACTCACCGCAAAACGACGTCTCCCCTCGTCGTTCGGGCCAAGATCCGGGAGATTTTCATGCCGGCACTCAGCTCAACTATGACGGAGGGTAAAATTGTCTCCTGGACCAAATCCGAGGGCGACAAGCTCTCCAAGGGCGACAGCGTCGTTGTCGTTGAGTCTGACAAGGCCGACATGGACGTCGAGACCTTCTACGACGGCTACCTCGCCGCCATCGTCGTCGAGGAAGGTGGCGTCGCTGCCGTCGGATCCCCCATCGCATTCCTTGCTGAAACCGAGGACGAGATTCAACAAGCCAAGTCCAAAGCATCCTCTTCCTCTTCCGCGCCCGCGCCCGCATCTGCACCTGCACCTTCACCGCCAGTGGAGTCTCAACCGGAGAAGGTTGCGGCGCCCGTCGCAGCTGCGGTTCCGGCTCCGGTCGTAGTGTCCAGTCATCCTGCTTCGGAAGGAGGGAAGAGGATTGTTGCGTCACCTTATGCGAAGAAGCTCGCCAAGGATTTGAAGGTGGAGTTGGGGAGGATAGTGGGAACTGGACCGATGGGGAGGATTGTTGCTAAAGATGTTGAGGCATTTGCAGCTTCTGGGAATGTTGCAGCAGTAGAATCACCAGCACCAGGGAAGAGTGTAACACCCGCCGGGGTGGAGTTGGGGTCCGTGGTGCCTTTCACTACAATGCAGAGTGCTGTGAGTAGAAACATGGTGGAGAGTTTGGCAGTTCCCACTTTTAGGGTTGGTTACACTATCACCACGGATGCACTTGATGCCTTGTACAAGAAGATCAAGTCAAAGGGAGTTACTATGACAGCATTGCTTGCCAAGGCTACTGCGCTTGCACTGGTCAAACACCCTGTTATGAACTCTAGCTGTAGAGATGGTAATAGCTTTACATATAATAGCAGCATCAATGTTGCAGTTGCTGTGGCTACAGATGGAGGATTGATTACACCAGTACTTCAGAATGCTGATAAGGTTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGATAAGGCCAGGTCCAAGCAGCTGCAACCTCATGAATACAACACTGGTACTTTCACTCTTTCCAATCTGGGAATGTTTGGTGTTGATCGATTTGATGCTATTCTGCCACCTGGAACTGGAGCAATAATGGCAGTTGGAGCATCACAGCCAACTGTTGTGGCTACCAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGGTCAATGTCACAGCTGATCATCGAGTCATCTATGGCGCTGATTTGGCTTCGTTCTTGCAAACACTCTCGTTGATTATTGAGGACCCCAAAGATCTTACTTTTTAG 1383 0.5213 MAHLLHTSFVPSSSSLRRPAVTHRKTTSPLVVRAKIREIFMPALSSTMTEGKIVSWTKSEGDKLSKGDSVVVVESDKADMDVETFYDGYLAAIVVEEGGVAAVGSPIAFLAETEDEIQQAKSKASSSSSAPAPASAPAPSPPVESQPEKVAAPVAAAVPAPVVVSSHPASEGGKRIVASPYAKKLAKDLKVELGRIVGTGPMGRIVAKDVEAFAASGNVAAVESPAPGKSVTPAGVELGSVVPFTTMQSAVSRNMVESLAVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALVKHPVMNSSCRDGNSFTYNSSINVAVAVATDGGLITPVLQNADKVDVYSLSRKWKELVDKARSKQLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASQPTVVATKDGRIGMKNQMQVNVTADHRVIYGADLASFLQTLSLIIEDPKDLTF 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02814 460 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 26 459 IPR045257 GO:0006086|GO:0045254
Vimu3g02814 460 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 61 90 IPR003016 -
Vimu3g02814 460 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 169 215 IPR036625 GO:0016746
Vimu3g02814 460 FunFam Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex 171 218 - -
Vimu3g02814 460 Gene3D - 32 136 - -
Vimu3g02814 460 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 177 214 IPR004167 GO:0016746
Vimu3g02814 460 Gene3D - 236 459 IPR023213 -
Vimu3g02814 460 SUPERFAMILY Single hybrid motif 35 129 IPR011053 -
Vimu3g02814 460 Gene3D - 165 218 IPR036625 GO:0016746
Vimu3g02814 460 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 32 135 - -
Vimu3g02814 460 Pfam e3 binding domain 176 211 IPR004167 GO:0016746
Vimu3g02814 460 ProSiteProfiles Biotinyl/lipoyl domain profile. 36 111 IPR000089 -
Vimu3g02814 460 MobiDBLite consensus disorder prediction 118 150 - -
Vimu3g02814 460 Coils Coil 110 130 - -
Vimu3g02814 460 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 241 458 IPR001078 GO:0016746
Vimu3g02814 460 Pfam Biotin-requiring enzyme 38 108 IPR000089 -
Vimu3g02814 460 SUPERFAMILY CoA-dependent acyltransferases 241 458 - -
Vimu3g02814 460 CDD lipoyl_domain 38 108 - -
Vimu3g02814 460 FunFam Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex 236 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02814 Vimu-Chr3 42393225 42398819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02814 1 460 Acyl Lipid Metabolism Gene Families AT1G34430 77.447 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02814 K00627 - gmx:100799926 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02814 3 42393225 42398819 Vimu3g02814 3 42393225 42398819 ECH