Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01650 ATGATGGCTCACCTTCTCCACACTCCCTTTATCCCTTCCTCCTCCGCGCTCCGCCGCGCCGCCCCCATTCCCCACCGCAAAACGACCACTCCACTCGTCGTTCGGGCCAAGATCCGGGAGATTTTCATGCCGGCACTGAGCTCCACCATGACGGAGGGCAAAATCGTCTCGTGGACCAAATCCGAAGGCGACAAGCTCTCCAAGGGCGACAGCGTGGTCGTCGTCGAGTCCGACAAGGCCGACATGGACGTCGAGACCTTCTACGACGGCTACCTCGCCGCAATCGTCGTCGAGGAAGGCGGCGTCGCCGCCGTCGGATCTCCCATCGCATTCCTCGCCGAGACCGAGGACGAGATTCCTCAAGCCAAGTCCAAAGCTTCTTCCTCCTCCTCTTCCTCTTCCGCACCCGCACCTGCAACTGCACCTGCACCAGCACCGCCGGTGGAATCTCAACCGGAAAAGGTTGCGGCGCCCGTCGCGGCGGCGGTTGCAGCTCCGGTCGTAGCGTCCAGTCATCCTGCTTCGGAGGGAGGGAAGAGGATTGTTGCTTCACCTTATGCGAAGAAGCTCGCCAAGGAGTTGAAGGTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGAAGGATTGTGGCTAAAGATGTTGAGGCATTTGCAGCTGCAGGGAATGTTGCAGCAGCGGTAGCACCAGCACTGGGGAAGAGTGCAGCACCTGCCGGGGTAGAGTTGGGATCCGTGGTGCCTTTCACCACAATGCAGAGTGCTGTGAGTAGGAACATGGCGGAGAGTTTGGCGGTTCCCACTTTCAGAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGATTAAGTCAAAGGGAGTCACAATGACAGCGTTGCTTGCTAAGGCTACTGCACTTGCACTTGTTAAACACCCTGTTATGAACTCTAGTTGTAGAGATGGTAATAGCTTTACATATAATAGCAGCATCAATATTGCAGTTGCTGTGGCTATAGATGGTGGACTGATTACACCAGTGCTTCAGGGTGCTGATAAGATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGATAAGGCCAGAGCGAAGCAGCTTCAACCTCATGAATACAACACTGGTACTTTCACTCTGTCCAATCTGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCATTCTTGCAAACCCTGTCCCAGATTATTGAGGACCCCAAAGATCTTACTTTCTAG 1398 0.5358 MMAHLLHTPFIPSSSALRRAAPIPHRKTTTPLVVRAKIREIFMPALSSTMTEGKIVSWTKSEGDKLSKGDSVVVVESDKADMDVETFYDGYLAAIVVEEGGVAAVGSPIAFLAETEDEIPQAKSKASSSSSSSSAPAPATAPAPAPPVESQPEKVAAPVAAAVAAPVVASSHPASEGGKRIVASPYAKKLAKELKVELGRIVGTGPMGRIVAKDVEAFAAAGNVAAAVAPALGKSAAPAGVELGSVVPFTTMQSAVSRNMAESLAVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALVKHPVMNSSCRDGNSFTYNSSINIAVAVAIDGGLITPVLQGADKIDVYSLSRKWKELVDKARAKQLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMKNQMQVNVTADHRVIYGADLASFLQTLSQIIEDPKDLTF 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01650 465 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 5 OF PYRUVATE DEHYDROGENASE COMPLEX, CHLOROPLASTIC 11 465 - -
Gma20g01650 465 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 63 92 IPR003016 -
Gma20g01650 465 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 182 219 IPR004167 GO:0016746
Gma20g01650 465 Pfam Biotin-requiring enzyme 40 110 IPR000089 -
Gma20g01650 465 MobiDBLite consensus disorder prediction 121 153 - -
Gma20g01650 465 CDD lipoyl_domain 40 110 - -
Gma20g01650 465 Gene3D - 169 223 IPR036625 GO:0016746
Gma20g01650 465 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 174 220 IPR036625 GO:0016746
Gma20g01650 465 SUPERFAMILY Single hybrid motif 37 130 IPR011053 -
Gma20g01650 465 MobiDBLite consensus disorder prediction 122 138 - -
Gma20g01650 465 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 11 465 IPR045257 GO:0006086|GO:0045254
Gma20g01650 465 SUPERFAMILY CoA-dependent acyltransferases 246 463 - -
Gma20g01650 465 Gene3D - 34 137 - -
Gma20g01650 465 Pfam e3 binding domain 181 216 IPR004167 GO:0016746
Gma20g01650 465 ProSiteProfiles Biotinyl/lipoyl domain profile. 38 113 IPR000089 -
Gma20g01650 465 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 246 463 IPR001078 GO:0016746
Gma20g01650 465 Gene3D - 242 464 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01650 Gma-Chr20 43611345 43617076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01650 2 465 Acyl Lipid Metabolism Gene Families AT1G34430 78.298 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01650 K00627 - gmx:100799926 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01650 20 43611345 43617076 Gma20g01650 20 43611345 43617076 ECH
Gma10g02063 10 48153736 48158788 Gma20g01650 20 43611345 43617076 GST