Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1444 ATGGGCAGAATCCACCCTTCCACATCTTTCCTTAACCTTGTTTTCTTCCTCTTTTATTTCTCTCCCGTGGTCTTGTCCATTCTATCACAAACCCAAACACAAACCATGAACAATCTCTCAAAGAATCTTACTGGTAGGATTCCATGGACTGGCTCAGACCCATGTGCATGGAAGGGAGTGAGTTGTCACCCTGCCAACTCCTCTGTAGTAGGGATTTCTTTATATGGCTTTTCACTCAATTCTTCTGACTTTCTGCCTCTTGTTTGCAAAATTAAAACTTTAGAGATTCTTGATGTCTCCAATAACCATCTGAGCTCAATCCATGATGATTTCATCACTGAGTGTGGAAAGATAAAGGGTTTGAAACTGTTGAATTTCAGTAATAACAATTTAGGTGTTTTACCTACTTTTCATGGCTTTGATGCATTGGAATCCCTGGATATGTCTTTCAATGCGATGAGGGGGACTATTGATTTAGAGATAGATGGGTTGGTTAGCCTCAAAATTTTGAATCTTAGTTTCAATGGATTCTCTGGGTCTCTTCCTACCAAATTGGGAAGGTCCATGGTTTTGGAGCACCTTCTGCTTTCTAGCAATAGCTTTGATGGCAAAATCCCTGATGAATTATTCAGTTATGAAAACTTGACTTGGATTGATCTTAAGAACAATATACTTTCACACCCTATTCCTACTAATATTGGGAAGCTTTCTAAATTAGAAACTTTGATCCTTTCCACTAATGACCTCACTGGTGAAATTCCAACTTCACTGGCGAACATCACCAAACTTTCAAGATTTGCAGCAAATCAGAACAAGTTCACAGGTTCTATACCTTCTGGGATTACAAAATATCTCACGAGTTTGGATCTTAGTTATAATACTCTGTCTGGCGCCATTCCAGAAGACTTTTTATCTCCACAACAGTTGCAGGTTGTAGAATTGACCAATAATAAGTTAAATGGGTCTTTACCTACGAAAGTTTCTCCAAATTTGTTCAGGTTGAGGTTTGGGAGAAATCAGCTGAGTGGAAACATTCCTTCAGATGCTTTTGTAGAACTTCATAATTTGACTTACTTGGAGCTTGATAACAATATCTTGACGGGATCAATACCAGCTGAATTGAGTTCTTGCAAGAGTTTGGCATTGTTGAATTTAGCTCAGAATCGGTTGAGTGGTGTATTGCCACAACAGCTTGGTAATCTTACCAATCTCCAGATGTTGCAGCTCCAATTGAATAATCTTAACGGCACAATCCCAACTCAAATTGGCCAACTTCATAAATTGTTAACCCTGAATTTGAGCCGGAATTCTCTGAGTGGACCAATTCCACCTGATATTGCAAATTTAAGCATTCTTAATTTCCTGTATTTGCAAGGCAACAATCTTAATGGTTCCATACCGACATCCATTGGCTACTTGAGGCGTCTTTTAGAACTTCAACTTGGGGAAAACCATCTAACAGGTGATATTCCAAGCATGCCAGAGAATCTGCAGATTTCATTGAATCTTAGTAGCAACCTCTTTAGTGGTTCTATTCCTAGAAGCTTGGGTAGTTTGACTAGCCTAGAAGTACTGGATCTCTCAAATAACAACTTTTCTGGTCAAATTCCTGTTGAGCTTACTACAATGCAGGCTTTGACATGGTTGATACTTTCTAACAACAATCTTCTGTCTGGTGAAATCCCAAGATTCAATCTCTATATTTATGTTGAATATTTTGGAACTAATCTAACAAATAATAGCGCACAGGGGAACCCAACTGCCAACACAGGGTCCAAGAAAGGAATAGGCGTTGGAGTAACCATTCTCATTGGAAGTGTTGCAGCTACTTTTCTTGGTGGCTTTGTCACTCTGTTGGTTGTCTTAAATTTATATCTGTGA 1881 0.3892 MGRIHPSTSFLNLVFFLFYFSPVVLSILSQTQTQTMNNLSKNLTGRIPWTGSDPCAWKGVSCHPANSSVVGISLYGFSLNSSDFLPLVCKIKTLEILDVSNNHLSSIHDDFITECGKIKGLKLLNFSNNNLGVLPTFHGFDALESLDMSFNAMRGTIDLEIDGLVSLKILNLSFNGFSGSLPTKLGRSMVLEHLLLSSNSFDGKIPDELFSYENLTWIDLKNNILSHPIPTNIGKLSKLETLILSTNDLTGEIPTSLANITKLSRFAANQNKFTGSIPSGITKYLTSLDLSYNTLSGAIPEDFLSPQQLQVVELTNNKLNGSLPTKVSPNLFRLRFGRNQLSGNIPSDAFVELHNLTYLELDNNILTGSIPAELSSCKSLALLNLAQNRLSGVLPQQLGNLTNLQMLQLQLNNLNGTIPTQIGQLHKLLTLNLSRNSLSGPIPPDIANLSILNFLYLQGNNLNGSIPTSIGYLRRLLELQLGENHLTGDIPSMPENLQISLNLSSNLFSGSIPRSLGSLTSLEVLDLSNNNFSGQIPVELTTMQALTWLILSNNNLLSGEIPRFNLYIYVEYFGTNLTNNSAQGNPTANTGSKKGIGVGVTILIGSVAATFLGGFVTLLVVLNLYL* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1444 626 SUPERFAMILY RNI-like 253 558 - -
Vra1g1444 626 ProSiteProfiles Leucine-rich repeat profile. 93 114 IPR001611 GO:0005515
Vra1g1444 626 PANTHER F12K21.25 13 623 - -
Vra1g1444 626 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 13 623 - -
Vra1g1444 626 Pfam Leucine Rich Repeat 355 377 IPR001611 GO:0005515
Vra1g1444 626 SUPERFAMILY L domain-like 51 324 - -
Vra1g1444 626 PRINTS Leucine-rich repeat signature 285 298 - -
Vra1g1444 626 PRINTS Leucine-rich repeat signature 519 532 - -
Vra1g1444 626 Pfam Leucine rich repeat 500 556 IPR001611 GO:0005515
Vra1g1444 626 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Vra1g1444 626 Pfam Leucine rich repeat 402 462 IPR001611 GO:0005515
Vra1g1444 626 Gene3D Ribonuclease Inhibitor 25 186 IPR032675 -
Vra1g1444 626 Gene3D Ribonuclease Inhibitor 187 283 IPR032675 -
Vra1g1444 626 SMART LRR_typ_2 236 259 IPR003591 -
Vra1g1444 626 SMART LRR_typ_2 449 473 IPR003591 -
Vra1g1444 626 SMART LRR_typ_2 91 114 IPR003591 -
Vra1g1444 626 SMART LRR_typ_2 164 188 IPR003591 -
Vra1g1444 626 SMART LRR_typ_2 519 543 IPR003591 -
Vra1g1444 626 SMART LRR_typ_2 401 425 IPR003591 -
Vra1g1444 626 SMART LRR_typ_2 118 139 IPR003591 -
Vra1g1444 626 SMART LRR_typ_2 353 377 IPR003591 -
Vra1g1444 626 Gene3D Ribonuclease Inhibitor 285 591 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1444 Vra-Chr1 22208221 22210665 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1444 143 564 Receptor kinase-like Gene Family AT2G41820 42.691 2.39e-77 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1444 - - vra:106759400 1179.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1444 1 22208221 22210665 Vra1g1444 1 22208221 22210665 ECH