Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g1601 | ATGTCTCAACTTCTCCACCTCGGCACCTCCTTCGTTCCCTCCTCCTCCTCCGCCCTCCGCCGCAACCCTACCTCCTCTCCGGCGATCCACATTTCTGGCAACAAACGGACCACCATTCAGGCTAAGATCCGGGAGATCTTCATGCCGGCGCTCAGCTCCACCATGACCGAAGGGAAGATCGTGTCCTGGGTCAAGTCCGAGGGCGACAAGCTCTCCAAGGGCGAGAGCGTCGTCGTGGTTGAGTCTGACAAGGCCGACATGGACGTCGAGACCTTCTACGACGGCTACTTGGCGGCAATTATGGTGGAGGAGGGTGGCGTCGCCGCCGTCGGCTCCGCCATCGCTCTGCTCGCCGAGACCGAGGATGAGATCGCGGAAGCCAGGTCCAAGGCCAATACTTCGCCGTCTTCGTCTCCTCCGTCGCCGGCGGCGGCGGCTGCGGCTCCAGAGGAGTCCGTGGGGGCTCCTGAGAAGGCCGCTCCAGTGAAGGCTGCGGCGACGGTGACTGTGGCGAAGATGGCGTCTTCGGTACATCCTGCGTCAGAGGGAGGGAAGAGGATTGTGGCGTCGCCGTATGCGAAGAAGCTCGCGAAGGAGTTGAATGTGGATTTGGGGAATGTGGTCGGGAGTGGTCCAATGGGGAGAATTGTGGCCAAGGATGTCGAAGCTGCAGCTGCTGCTGGAGTGAGTGTTGCAGCGGAGGATCCGAAGCCCAGCCCTAGCTCGGCTCCGGTTAAAGCCCCGGCGAGCACGGGGATTGAGTTGGGGACGGTGGTGCCGTTTACCACAATGCAAGGCGCAGTTAGTCGGAACATGGTTGATAGTCTTACTGTGCCAACTTTTAGAGTTGGGTACACCATAACTACTGATGCTCTTGATGCCCTCTACAAGAAGATTAAGTCAAAGGGTGTGACGATGACAGCATTACTTGCAAAGGCAACAGCACTTGCTTTGGTTAAACATCCTGTTGTAAACTCTAGTTGCAGAGATGGTAAGAGCTTTACATATAACAGTAGTATCAATATTGCGGTTGCAGTGGCCATAGATGGTGGGTTGATTACACCAGTGCTTCAGGATGCTGATAAGGTGGACATTTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCCGAGCAAAGCAGCTGCAACCTCATGAATACAATACAGGTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTGGAGCAATCATGGCGGTTGGAGCATCAGAACCAACCGTTGTTGCCACCAAGGATGGTCGGATTGGCATGAAGAGCCAGATGCAGGTGAATGTTACAGCAGATCATCGGGTAATATATGGTGCTGATCTGGCTTCTTTCTTGCAAACCTTGGCCAAGATTATAGAAGACCCCAAAGATCTTACTTTCTAG | 1434 | 0.5425 | MSQLLHLGTSFVPSSSSALRRNPTSSPAIHISGNKRTTIQAKIREIFMPALSSTMTEGKIVSWVKSEGDKLSKGESVVVVESDKADMDVETFYDGYLAAIMVEEGGVAAVGSAIALLAETEDEIAEARSKANTSPSSSPPSPAAAAAAPEESVGAPEKAAPVKAAATVTVAKMASSVHPASEGGKRIVASPYAKKLAKELNVDLGNVVGSGPMGRIVAKDVEAAAAAGVSVAAEDPKPSPSSAPVKAPASTGIELGTVVPFTTMQGAVSRNMVDSLTVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALVKHPVVNSSCRDGKSFTYNSSINIAVAVAIDGGLITPVLQDADKVDIYSLSRKWKELVDKARAKQLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMKSQMQVNVTADHRVIYGADLASFLQTLAKIIEDPKDLTF* | 478 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1601 | 477 | Gene3D | - | 38 | 142 | - | - | |
| Vvi18g1601 | 477 | ProSitePatterns | 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. | 68 | 97 | IPR003016 | - | |
| Vvi18g1601 | 477 | SUPERFAMILY | CoA-dependent acyltransferases | 257 | 475 | - | - | |
| Vvi18g1601 | 477 | Gene3D | - | 252 | 476 | IPR023213 | - | |
| Vvi18g1601 | 477 | FunFam | Acetyltransferase component of pyruvate dehydrogenase complex | 39 | 142 | - | - | |
| Vvi18g1601 | 477 | SUPERFAMILY | Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 180 | 225 | IPR036625 | GO:0016746 | |
| Vvi18g1601 | 477 | Gene3D | - | 182 | 229 | IPR036625 | GO:0016746 | |
| Vvi18g1601 | 477 | Pfam | e3 binding domain | 187 | 222 | IPR004167 | GO:0016746 | |
| Vvi18g1601 | 477 | FunFam | Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex | 253 | 476 | - | - | |
| Vvi18g1601 | 477 | SUPERFAMILY | Single hybrid motif | 42 | 135 | IPR011053 | - | |
| Vvi18g1601 | 477 | Pfam | Biotin-requiring enzyme | 45 | 116 | IPR000089 | - | |
| Vvi18g1601 | 477 | ProSiteProfiles | Biotinyl/lipoyl domain profile. | 43 | 118 | IPR000089 | - | |
| Vvi18g1601 | 477 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Vvi18g1601 | 477 | ProSiteProfiles | Peripheral subunit-binding (PSBD) domain profile. | 188 | 225 | IPR004167 | GO:0016746 | |
| Vvi18g1601 | 477 | FunFam | Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex | 182 | 229 | - | - | |
| Vvi18g1601 | 477 | MobiDBLite | consensus disorder prediction | 126 | 158 | - | - | |
| Vvi18g1601 | 477 | Pfam | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) | 257 | 475 | IPR001078 | GO:0016746 | |
| Vvi18g1601 | 477 | Coils | Coil | 110 | 130 | - | - | |
| Vvi18g1601 | 477 | CDD | lipoyl_domain | 45 | 117 | - | - | |
| Vvi18g1601 | 477 | PANTHER | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED | 34 | 476 | IPR045257 | GO:0006086|GO:0045254 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi18g1601 | Vvi-Chr18 | 20443201 | 20449177 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1601 | 1 | 477 | Acyl Lipid Metabolism Gene Families | AT1G34430 | 75.565 | 0.0 | 653 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g1601 | K00627 | - | vvi:100245266 | 836.639 |