Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02650 ATGTCTCAGCTTCTTCAAACCCCGTTCCTCCATTCCACCACCGTCCTCCGCCGCACTCCCACTTCACTCCACCGCACTTCAACCCCCACCAACAACCTCGTCGTCCGTGCCAAGATCCGAGAGATTTTCATGCCCGCACTTAGCTCCACTATGACCGAGGGCAAAATCGTGTCGTGGATCAAATCCGAAGGCGACAAACTCTCCAAAGGCGATAGCGTTGTCGTCGTTGAGTCCGATAAGGCGGACATGGACGTCGAGACTTTCTATGATGGTATACTCGCTGCTATTGTTGTTGAAGAAGGCGGCGTCGCCGCCGTTGGATCTCCGATAGCATTTCTCGCTGAAACTGAACAAGAAATCGAACAAGCCAGGTCCAAAGCCCTCTCTTCATCATCTTCATCTTCATCACCTTCAGCATCTCATTCTACTCCACCACCAGCACCTTCACCTCCACCGGTAGAATCTCAACCGAAGAAACCTGTTGCAGCGGCGGTTGTGTCTAAACATCCTGCTTCCGAGGGAGGGAAGAGAATAGTGGCGTCGCCTTATGCGAAGAAACTGGCTAAGGAATTGAATGTGGAGTTGGGTCAAATTGTTGGGACTGGACCTTCAGGGAGGATTGTGGCTAAAGATGTTGAGGCGTTTGCAGCTTCAGACAGTTCTTCTTCCGCGGGTGTTGCCGCTGCGGCCGAGCCAGCCAAGACTGCTGTTTCCGGTGTTGAATTGGGAAGTGTGGTGCCGTTTACAACAATGCAGAATGCTGTGAGTAGAAACATGGTAGACAGTTTGGTTGTTCCCACTTTCAGAGTCGGTTACACTTTCACCACTGATGCACTTGATGCTCTCTATAAGAAGATTAAATCAAAGGGAGTTACTATGACTGCATTGCTTGCCAAGGCTACAGCACTTGCGCTAGCTAAACACCCTGTTATAAACTCTAGTTGTAGGGATGGTAATAGCTTTACTTACAATAGCAGCATCAACATTGCAGTTGCTGTGGCTATAGATGGCGGACTTATTACTCCAGTGCTTCAGGATGCTAATAAGGTTGATGTCTATTCTTTGTCAAGAAAGTGGAAGGAGTTGGTTGATAAGGCCCGAGCTAAGCAGTTGCAGCCTCATGAATACACCACAGGTACTTTCACCCTTTCCAACCTGGGAATGTTTGGCGTTGACCGCTTTGATGCTATTCTGCCTCCTGGAACTGGAGCAATTATGGCAGTTGGATCATCACAGCCAACTGTTGTGGCTACCAAGGATGGTCGCATTGGCGTGAAGAACCAAATGCAGGTCAATGTTACGGCAGATCATCGAGTAATCTACGGTTCCGATCTAGCTCTCTTCTTGCAAACCCTGTCACAGATCATTGAAGACCCTAAAGATCTTACTTTCTAG 1395 0.4882 MSQLLQTPFLHSTTVLRRTPTSLHRTSTPTNNLVVRAKIREIFMPALSSTMTEGKIVSWIKSEGDKLSKGDSVVVVESDKADMDVETFYDGILAAIVVEEGGVAAVGSPIAFLAETEQEIEQARSKALSSSSSSSSPSASHSTPPPAPSPPPVESQPKKPVAAAVVSKHPASEGGKRIVASPYAKKLAKELNVELGQIVGTGPSGRIVAKDVEAFAASDSSSSAGVAAAAEPAKTAVSGVELGSVVPFTTMQNAVSRNMVDSLVVPTFRVGYTFTTDALDALYKKIKSKGVTMTALLAKATALALAKHPVINSSCRDGNSFTYNSSINIAVAVAIDGGLITPVLQDANKVDVYSLSRKWKELVDKARAKQLQPHEYTTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGSSQPTVVATKDGRIGVKNQMQVNVTADHRVIYGSDLALFLQTLSQIIEDPKDLTF 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02650 464 Gene3D - 35 139 - -
Vifa3g02650 464 MobiDBLite consensus disorder prediction 123 140 - -
Vifa3g02650 464 SUPERFAMILY Single hybrid motif 38 129 IPR011053 -
Vifa3g02650 464 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 35 138 - -
Vifa3g02650 464 CDD lipoyl_domain 41 111 - -
Vifa3g02650 464 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 64 93 IPR003016 -
Vifa3g02650 464 MobiDBLite consensus disorder prediction 141 157 - -
Vifa3g02650 464 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 171 217 IPR036625 GO:0016746
Vifa3g02650 464 Gene3D - 173 218 IPR036625 GO:0016746
Vifa3g02650 464 Pfam Biotin-requiring enzyme 41 111 IPR000089 -
Vifa3g02650 464 Pfam e3 binding domain 178 213 IPR004167 GO:0016746
Vifa3g02650 464 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 179 216 IPR004167 GO:0016746
Vifa3g02650 464 MobiDBLite consensus disorder prediction 123 169 - -
Vifa3g02650 464 FunFam Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex 240 463 - -
Vifa3g02650 464 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 23 463 IPR045257 GO:0006086|GO:0045254
Vifa3g02650 464 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 245 462 IPR001078 GO:0016746
Vifa3g02650 464 ProSiteProfiles Biotinyl/lipoyl domain profile. 39 114 IPR000089 -
Vifa3g02650 464 Gene3D - 234 463 IPR023213 -
Vifa3g02650 464 SUPERFAMILY CoA-dependent acyltransferases 245 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02650 Vifa-Chr3 731615280 731618727 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02650 1 464 Acyl Lipid Metabolism Gene Families AT1G34430 73.573 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02650 K00627 - gmx:100786455 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02650 3 731615280 731618727 Vifa3g02650 3 731615280 731618727 ECH