Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0122 ATGGCTCACATTCTTCACACTCCATTTCTCACTTCTTCATCTTCTCTTCGCCCTAACCCTAACCCTAACATTACTCAATCTCGCTCTTCTTCTTCTCCGAATGTTGTTCGTGCTAAGATCCGTGAGATTTTCATGCCTGCTCTCAGTTCCACTATGACTGAGGGTAAAATCGTCTCTTGGCTCAAATCTCAGGGTGATAAACTTTCTAAAGGTCAAAGCGTCGTTGTTGTTGAATCCGATAAAGCTGATATGGATGTTGAAACTTTCTATGACGGTTACCTCGCTGCTATTATGGTTGATGAAGGTGATGTCGCTGCCGTTGGATCTCCCATCGCTCTTCTTGCTGAATCCGAAGATGAGATTTCTCTGGCAATTTCCAAAGCTCAATCATTATCATCATCATCATCAGCAGCAGCAACAACGGTAACTTCTGATTCATCTTCCGCTCCACCTGCTTCGGAATCTGGTGAGGTTGCGGTTAAGGCTCCGGTGGTGGTTGCAGTTGCGTCCACGCATCCGGCGTCAGAGGGAGGGAAGAGGATAGTGGCATCACCGTATGCAAAGAAATTGGCCAAGGAGTTGAAGGTGGAGTTAGAGAGAGTTGTAGGGAGTGGACCTTTGGGTAGGATTGTGGCAAAGGATGTTGAGGCTTTCGCAGCTTCTGCTCCTGCTGTCGCTGTTACTCCGGCGGCTGTGGCTGCTGTGGCGGCGCCTCCTTCGGGAGGGGTTGATTTGGGAAGTGTGGTGCCTTTTACCACAATGCAGAATGCTGTGAGTAGGAATATGGTGGAGAGTTTGGGGGTACCAACTTTTAGAGTTGGTTACACCATTACCACTGATGCACTTGATGCTCTCTACAAAAAGATCAAGTCAAAGGGAGTTACTATGACAGCATTGCTTGCCAAGGCTACAGCACTTGCTCTGGCTAAACACCCTGTTATAAACTCTAGTTGCAGAGATGGTAATAGCTTCACATATAATAGCCACATCAACATTGCAGTTGCTGTCGCTATAGATGGCGGACTGATTACACCAGTGCTTGAGGATGCTGATAAGGTTGATGTCTATTCCTTGTCAAGAAAGTGGAAAGAGTTGGTCGATAAGGCCCGTGCAAAGCAGCTGCAACCTCATGAATACAGCACAGGTACTTTCACTCTTTCCAACCTGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCTCCTGGAACTGGAGCAATAATGGCTGTTGGAGCATCACAGCCAACTGCTGTGGCTACCAAGGACGGTCGCATTGGCCAGAAGAACCAAATGCAGGTCAATGTTACGGCTGATCATCGGGTGATCTACGGTGCTGATCTGGCTTCATTCTTGCAAACCCTGTCACAGATCATTGAGGACCCTAAGGATCTTACTTTCTAG 1404 0.4751 MAHILHTPFLTSSSSLRPNPNPNITQSRSSSSPNVVRAKIREIFMPALSSTMTEGKIVSWLKSQGDKLSKGQSVVVVESDKADMDVETFYDGYLAAIMVDEGDVAAVGSPIALLAESEDEISLAISKAQSLSSSSSAAATTVTSDSSSAPPASESGEVAVKAPVVVAVASTHPASEGGKRIVASPYAKKLAKELKVELERVVGSGPLGRIVAKDVEAFAASAPAVAVTPAAVAAVAAPPSGGVDLGSVVPFTTMQNAVSRNMVESLGVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALAKHPVINSSCRDGNSFTYNSHINIAVAVAIDGGLITPVLEDADKVDVYSLSRKWKELVDKARAKQLQPHEYSTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASQPTAVATKDGRIGQKNQMQVNVTADHRVIYGADLASFLQTLSQIIEDPKDLTF* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0122 467 Gene3D - 36 141 - -
Lan20g0122 467 Gene3D - 245 466 IPR023213 -
Lan20g0122 467 Pfam e3 binding domain 181 216 IPR004167 GO:0016746
Lan20g0122 467 MobiDBLite consensus disorder prediction 11 32 - -
Lan20g0122 467 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 5 OF PYRUVATE DEHYDROGENASE COMPLEX, CHLOROPLASTIC 13 467 - -
Lan20g0122 467 ProSiteProfiles Biotinyl/lipoyl domain profile. 40 115 IPR000089 -
Lan20g0122 467 Gene3D - 168 222 IPR036625 GO:0016746
Lan20g0122 467 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 182 219 IPR004167 GO:0016746
Lan20g0122 467 CDD lipoyl_domain 42 114 - -
Lan20g0122 467 Pfam Biotin-requiring enzyme 42 113 IPR000089 -
Lan20g0122 467 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 174 220 IPR036625 GO:0016746
Lan20g0122 467 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 13 467 IPR045257 GO:0006086|GO:0045254
Lan20g0122 467 SUPERFAMILY Single hybrid motif 39 122 IPR011053 -
Lan20g0122 467 SUPERFAMILY CoA-dependent acyltransferases 248 465 - -
Lan20g0122 467 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 248 465 IPR001078 GO:0016746
Lan20g0122 467 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 65 94 IPR003016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0122 Lan-Chr20 733750 737241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0122 1 467 Acyl Lipid Metabolism Gene Families AT1G34430 75.372 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0122 K00627 - gmx:100799926 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0122 20 733750 737241 Lan20g0122 20 733750 737241 ECH